Chryseobacterium bernardetii: EG339_14335
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Entry
EG339_14335 CDS
T06826
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cben
Chryseobacterium bernardetii
Pathway
cben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG339_14335 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cben03019
]
EG339_14335 (rny)
Messenger RNA biogenesis [BR:
cben03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EG339_14335 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
EIF4E-T
KH_NusA_2nd
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AZB25682
UniProt:
A0A3G6T8S3
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Position
3094905..3096473
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AA seq
522 aa
AA seq
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MMIELIVGVVCLVIGAAVGMFFSRSSLNTKAKFIIDDAKKNAENLIEKANVQAESIKKEK
NLQAKEKFLELKSQHDADIQSREKKMQEIEKRTKDKEHKLNDELSKIGKLEKDLDRQIAD
YSKKNEILEKKQHELDTATAKKVEILEKISNYTAEEAKAELVETMKAEAKTRAQAHVQSI
MEEAQMNAKNEARKIVIQTIQRIGTEQAIENSVSVFNIESDEVKGRIIGREGRNIRALEA
VTGVEIIVDDTPEAILLSCFDPVRREIARLSLHRLVTDGRIHPARIEEVVEKTRKQIEEE
IIEVGKRTIIDLGIHGLHPELIKIVGRMKYRSSYGQNLLQHSREVANIAATMAAELGLNV
KLAKRAGLLHDIGKVPEQESELPHALLGMQWAEKYGENPEVVNAIGAHHDEIEMKSLLSP
IIQVADAISGARPGARRQVLESYIQRLKDLESAALSFDGVSSAYAIQAGRELRVMVESGK
VNDEVASQLSYDISEKIQNELTYPGQVKVTVIRETRAVNIAR
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
attatgatagaacttatagtcggtgttgtttgtttggtaatcggagcggccgtgggaatg
tttttctccaggagttctctgaatactaaggcaaaatttattatagatgatgcaaagaaa
aacgccgaaaatcttatagaaaaagccaacgtacaggctgaatccataaagaaggaaaag
aacctgcaggctaaagaaaagttccttgaactgaaatcacagcatgatgctgacatccag
tcccgcgaaaagaaaatgcaggagattgaaaaaagaactaaagacaaggagcataagctt
aatgatgagcttagcaagattggaaaacttgaaaaagatttagacagacagattgctgat
tattctaagaaaaatgaaattttggagaagaagcagcacgaattggatactgctacagct
aaaaaagttgaaattcttgaaaagatatcaaactataccgctgaagaagctaaagcagaa
ttggtagaaaccatgaaagcagaagctaaaaccagagctcaggcacacgttcagagcatt
atggaggaagctcagatgaatgctaagaatgaagcgagaaagattgttatccaaaccatt
cagagaatcggtacagaacaggctatcgaaaattccgtatcagtattcaacattgaatct
gatgaagtaaaaggtagaatcatcggtagagaaggtagaaatatccgtgctttagaagcc
gtaacaggagttgagatcatcgttgatgatacccctgaagccatcctgctttcatgcttt
gatccggtaagaagagagatcgcaagattatcacttcacagattggttaccgatggtaga
attcacccggcaagaatcgaagaagttgtagaaaaaacaagaaaacaaattgaagaggaa
attattgaagtaggaaagagaacgattattgatttaggaatccacggattacaccctgag
ttaatcaagatcgttggtagaatgaaataccgttcttcttacggacagaacctgttacag
cactcaagagaagtagctaacattgctgcaactatggctgcagaattaggattaaacgtt
aagctagcgaagagagcgggtcttttacacgatatcggtaaagttcctgagcaggaatca
gaattacctcacgcgctattaggaatgcagtgggctgagaaatacggtgaaaaccctgaa
gtggtaaacgctattggtgctcaccacgacgaaattgaaatgaagtctctgttgtctcca
atcattcaggtagccgatgctatctcaggtgcaagaccaggtgcaagaagacaggtattg
gaatcttatatccagagactgaaagatcttgaatctgcagcattaagcttcgatggagta
tccagcgcctatgcaatccaggcaggtagagagctgagagtaatggtagaaagtggaaaa
gtgaacgatgaagtagcttctcaactgtcttacgatatctctgaaaagatccagaatgag
cttacttaccctggacaggtgaaagtaaccgtaatcagagaaacaagagcagtgaacatt
gcaagataa
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