Cognaticolwellia beringensis: B5D82_02395
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Entry
B5D82_02395 CDS
T05628
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cber
Cognaticolwellia beringensis
Pathway
cber03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cber00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5D82_02395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cber03019
]
B5D82_02395
03009 Ribosome biogenesis [BR:
cber03009
]
B5D82_02395
Enzymes [BR:
cber01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B5D82_02395
Messenger RNA biogenesis [BR:
cber03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B5D82_02395
Ribosome biogenesis [BR:
cber03009
]
Prokaryotic type
rRNA helicases
B5D82_02395
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ASP49847
UniProt:
A0A222GDA0
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All DBs
Position
577713..579515
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AA seq
600 aa
AA seq
DB search
MTDLNNASVGFDALGLPENLVSAVKALGFESSTPIQAQTIPPLLQGKDVLGEAQTGTGKT
AAFGLPALAKIDVTIRKPQLMVLAPTRELAIQVAEAIETFAKDMKGLKVATLYGGQSYQP
QFQQLERGAQVVVGTPGRLMDHLRRKSLKLDNLSFCVLDEADEMLNMGFLEDIEWILEHL
PKETQMALFSATMPPQIRKVANRFLKNPEHIKVAAVKKEKANITQYAWKVSGINKMTALE
RIAETVEYDAMLIFVRTRNDTIDVAEKLERAGYASVALNGDMNQAQRERTVDQLKSGVSS
ILVATDVVARGLDIPRLSLVINYDLPGDNEAYVHRIGRTGRAGRSGTAISFVRPREMYSL
RHYERLTSGTIAMYDLPNIQEIGKARIERTCNELASIVADKELTAMREIIETMASESELS
MTDLAAALLYQKQLKQPLQPKEDPKPRRDARERNDRDSSGRNDARGGRNDSRGGRNEARG
GRADSRNEGRAERAPRKAKVARSDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDSSYI
GAINLHDKHSFVQLPKGMPEKSFTQLKRVQVRRQALAITVSDVQPAAERPARARKEQRTN
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcttaacaatgcctctgtaggctttgacgcccttggtttgcctgaaaactta
gtatctgctgtaaaagcactaggttttgaatcatctactccaatccaagcgcaaacaatt
ccacctttacttcaaggtaaagacgttcttggtgaagcacaaaccggtacaggtaaaact
gctgcttttggtttgcctgcactagcaaaaatagacgtaactatacgtaaaccacaatta
atggtgctagcgccaacacgtgagttagccattcaagtagcagaagcgattgaaactttt
gccaaagacatgaaaggtttgaaagttgcgactttatacggtggtcaatcttaccaacca
caatttcaacaactagaacgtggtgcacaagttgttgtgggtacgccgggtcgtttaatg
gatcacttacgtcgtaagagccttaaattagataacttatcattttgtgtgcttgatgaa
gccgatgaaatgttaaacatgggctttttagaagacattgagtggatccttgagcatcta
cctaaagaaacacaaatggcgttgttctctgcaaccatgccaccgcaaattcgcaaagta
gcgaatcgctttttgaaaaatcctgagcacattaaagttgctgcagtgaaaaaagaaaaa
gccaatattacacaatacgcttggaaagttagcggcattaacaaaatgaccgctttagag
cgtattgctgaaactgttgaatatgatgcaatgctaatcttcgttcgtactcgtaacgat
actattgatgttgctgaaaaattagaacgtgcaggctatgcctctgttgctttaaacggt
gatatgaaccaagcacagcgtgaacgtactgttgaccaacttaaatcaggtgtttcatca
attcttgtagcgactgatgttgttgctcgtggtcttgatattccgcgtctttcattagtt
attaactatgatttaccgggtgacaacgaagcttacgttcaccgtataggccgtacaggc
cgtgctggtcgtagtggtacagcgatttcatttgttcgtccacgtgaaatgtattcttta
cgtcattatgagcgtttaacctctggtacgattgcaatgtacgacttaccaaatattcaa
gaaattggtaaagcccgtattgagcgtacttgtaatgagttagcgtctattgttgctgat
aaagaattaactgcaatgcgcgaaattattgaaactatggcaagtgagtcagaactttca
atgacagatttagcggcagcgttactttatcaaaaacagttaaagcaaccattacaaccg
aaagaagatcctaagcctcgtcgtgatgcacgtgaaagaaatgatcgtgatagcagtggt
cgcaatgatgcacgtggtggtcgtaacgatagtcgtggcggtcgtaacgaagctcgcggt
ggtcgtgcggatagtcgcaacgaaggtcgtgcagagcgcgctcctcgtaaagcgaaagtg
gcacgttcagatgttgattggcagacttaccgcttagaagtgggtaaagagcatggtgca
cgtcctggtgatatcgttggcgcaattgctaatgaaatatcattagacagcagctacatc
ggtgctatcaacttgcatgacaaacatagctttgtacagttacctaaaggtatgcctgaa
aagtcttttacacaattaaagcgtgttcaagttcgtcgtcaagcacttgctattacggta
tcagatgtacagccagctgctgagcgtccagcacgcgcacgtaaagagcaacgcactaac
taa
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