Cognaticolwellia beringensis: B5D82_04405
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Entry
B5D82_04405 CDS
T05628
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cber
Cognaticolwellia beringensis
Pathway
cber03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cber00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5D82_04405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cber03019
]
B5D82_04405
Enzymes [BR:
cber01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B5D82_04405
Messenger RNA biogenesis [BR:
cber03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B5D82_04405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
UvrD-helicase
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ASP47078
UniProt:
A0A222G592
LinkDB
All DBs
Position
1056298..1057497
Genome browser
AA seq
399 aa
AA seq
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MPFSQLGLSNPIVNAIADLDYRQPTDIQKRAIPVILSGKDVIAAAQTGTGKTASFVLPLL
EKLHAAESDTERNLRGKRIRVLIVTPTRELAVQVEANIAQYSKYLNISSMAMYGGTEIEP
QKQRLIWGIDILVATPGRLLDMAHQRAVYFDQLEAFVLDEADRMLDMGFIDDINKIIERL
PEQRQNLLFSATISDDVRALAKRTLHHATEISIAKNSDSKPKISQWLVTVDKGNKSALLS
YLIKEQQWQQALIFIETKHGAAKLVSQLEKRGIKAESIHSGRTQAIREQILNDFKAGKID
FLVATAIAARGIDIGELARVVNYDLPDKVDDYTHRIGRTGRAGKNGEAVSFVAKDNFRNL
CAIESNLGHVIERREFEEFPVKKVVPVSILNYVPKNKRT
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgccattttcccaacttggattgtcaaatccgatagtaaatgcgatagctgatttagat
tatcgtcaacccactgatatacaaaaacgtgctataccggttattttatctggtaaagat
gtaattgctgcagcgcaaaccggcacaggaaaaaccgcaagttttgtcttgcccttatta
gagaaattacacgcggcagaaagtgatactgagcgtaatttacgtggcaaacgcattcga
gtattaatcgtaacaccaactcgcgagttagcggttcaggttgaagctaatattgctcaa
tatagtaaatatttaaatataagttctatggcgatgtatggcggcactgaaatagaaccg
caaaagcagcgcttaatttggggcattgatattttggtagcaaccccaggtcgactgctc
gatatggcacaccagcgggcggtatattttgatcaacttgaagcttttgtacttgatgaa
gcagatagaatgctcgatatgggctttattgatgacattaataaaattattgagcgcttg
ccagaacaacgtcaaaatttattattctcggccactatttctgatgatgtcagggcatta
gctaaaagaacactgcatcatgccacggaaatttctatcgctaaaaatagtgattcaaaa
ccgaaaatatcacaatggttagttacagtagataaaggcaacaaatcagccttattgagt
tacttgattaaagaacaacaatggcagcaagcccttatttttattgaaacaaaacatggt
gcggcaaagcttgttagtcaactagaaaaacgtggcattaaagctgaatctattcacagt
ggccgaacgcaagcaattcgcgaacaaattttgaatgactttaaagccggtaaaatagac
tttctagttgccacggccatcgctgcacgtggtatagatattggcgaactggcgcgcgtg
gtcaattatgacttacctgataaagtagacgactatactcaccgtatcggtcgcacgggt
cgtgcaggtaaaaatggtgaagcggtatcttttgtcgctaaagacaactttagaaacctt
tgtgcgattgaaagtaacttagggcatgttattgaacgccgagagtttgaagagtttccg
gttaaaaaagtggtccccgtgtccattttaaattatgtgcctaaaaacaagcgtacttag
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