Cognaticolwellia beringensis: B5D82_06425
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Entry
B5D82_06425 CDS
T05628
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cber
Cognaticolwellia beringensis
Pathway
cber03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cber00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5D82_06425 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cber03019
]
B5D82_06425 (rnr)
03016 Transfer RNA biogenesis [BR:
cber03016
]
B5D82_06425 (rnr)
Enzymes [BR:
cber01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B5D82_06425 (rnr)
Messenger RNA biogenesis [BR:
cber03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B5D82_06425 (rnr)
Transfer RNA biogenesis [BR:
cber03016
]
Prokaryotic type
tRNA degradation factors
B5D82_06425 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
ASP47424
UniProt:
A0A222G7T7
LinkDB
All DBs
Position
complement(1537774..1540239)
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AA seq
821 aa
AA seq
DB search
MTNKDPHKQREADKYDKPVASRELLLSLIEKSNIPPTFKALIKQLQYTDDDMVVGVKHRL
RAMENSGQIVFNKFKQYAIANRSDVLTGKVIGHRDGFGFFAPDNGDKDFYISSYEMKRVI
HGDIVEAILIDRTDRKGRKEVKILDVIKPRTAGVVGRFYVDHHIASVVPDDARIQQEILI
QPDKKLGARHGEVVVVNVIQRPTKRSNAVGEVIEVLGEHMAPGMEIEIALREHDLPNQFS
PEVIAEVSGIADEVEESAKAPRIDLRDLPLVTIDGEDARDFDDAVYCKPNAGGGWTLWVA
IADVSYYVRDKTALDEEAISRGNSVYFPSQVIPMLPEKLSNGLCSLNPDVDRLCMVCEMN
ISASGELSGSKFYSAVMRSHARFTYSKVATILGVNPEQKDEDYRAELRTQYQALIPDLEN
LNTMYHVLSKARTERGAIAFETTESQFLFNSDRKIESIVAMVRNDAHKIIEECMILANVA
TAEFIEKHKKPGLFRVHDKPSEDKYNNFISYVNELGLDLSSMGERKTQPEPKDYCHILEK
IADRPDQELIQTMLLRSMRQAVYQSDNIGHFGLALPSYSHFTSPIRRYPDLVVHRVIKAI
LDEQAKDEANAGAHSYTPEAVIELGEHCSMTERRADDATRDVSDWLKCEYMQDHVGDTFT
GVISTVTNFGLFVRLADLHIEGLVHITSLGHDYYHFDDVRMCLTGENTGAKYHIGDTVEV
QVAAVNLDEKKIDLALAGANAVIKRAKPQTKGKSSDKHKRGKRSAGKSASQDAKASFDEK
AKPSKKPVKAADKASDKTTAKAKKRKARKKRPGKNARKADT
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaataaagacccgcacaaacagcgtgaagctgacaaatatgataaacccgtagca
agccgtgagctgctattgtcgctgatcgaaaaatctaacatcccgcctacgtttaaagcc
cttattaaacaactacaatatactgatgacgatatggtggttggggtaaaacaccgttta
cgtgccatggaaaatagtggccaaattgtgtttaataagtttaagcaatatgccatcgca
aaccgtagtgatgtgttaaccggcaaagtcatcggtcatcgtgatggttttggcttcttt
gcgccagacaatggtgacaaagacttctatatatcatcatatgaaatgaaacgtgtaatc
cacggtgatattgtagaagcgatcttgatagaccgcactgaccgaaaaggtcgcaaagaa
gtaaaaatactcgatgtgattaaaccacgcactgcaggggttgttgggcgattttatgtt
gatcatcatatcgcttctgttgtgcctgatgatgcgcgtattcagcaagaaattcttatc
caaccggataaaaaattaggcgctcgccatggcgaagtcgtagtcgttaatgttattcaa
agacctactaagcgttcaaatgcagtgggtgaagtgattgaagtgctcggtgaacatatg
gcgccggggatggaaattgaaatagccttgcgtgaacatgatcttccaaatcaattttcg
ccagaagtaattgccgaagttagcggtattgctgatgaagttgaagagtcagcaaaagca
ccaagaatagatttacgcgatttacctttagtcaccattgatggtgaagacgcccgagat
tttgacgatgcggtatattgtaagcctaatgctggtggcggttggacgttatgggtggcg
attgctgatgtgagttattatgtgcgtgataaaaccgcactagatgaagaagcaatttct
cgtggtaattcagtgtattttcctagccaagttattccgatgttaccggaaaaactttcc
aatggcctgtgttcattaaatccagatgttgaccgactgtgtatggtttgcgaaatgaat
atttctgcttcgggagaattatcaggatctaaattttattctgctgtaatgcgctctcac
gcgcgttttacttatagcaaagtcgcgactattttaggcgtaaatcctgagcaaaaagat
gaagattaccgcgcagaattacgcacacaatatcaagcactgatacctgatttagaaaac
ctaaataccatgtatcacgtgctaagcaaagcaagaacagaacgtggtgctattgctttt
gaaacgacagaatcgcagtttctttttaacagtgatagaaaaatagaatctatcgtggca
atggtgcgtaacgacgcacataaaatcattgaagaatgtatgattttagctaacgttgcg
acagcagagttcattgaaaaacataaaaaacccggtttattccgtgtgcacgataagcca
agtgaagacaagtataataactttatcagttatgttaacgagctgggacttgacctgtct
tccatgggagaacgtaaaacacagcctgagccgaaagactattgccatatattagaaaaa
attgccgaccgtccggatcaagagcttattcaaaccatgctgttgcgttctatgcgccaa
gcggtttatcaaagcgacaatatcggccactttggcctagcactgccatcatatagccat
tttacttcgcccatacgccgttacccagatttagtggtgcatcgtgttattaaagctatt
ttagatgagcaagctaaagatgaagcgaatgctggcgcacatagctatacacctgaagcg
gtgatagagcttggtgaacattgttctatgaccgaacgtcgtgctgacgatgccacgcgt
gatgtctcagattggctgaaatgtgaatatatgcaagaccatgttggtgatacttttacc
ggtgtcatctcaactgtgaccaactttggtttatttgtgcgtttagctgatttacacatt
gaaggtttagtgcatatcacctcattaggtcatgactattaccactttgacgatgtgcgc
atgtgcttaacaggtgaaaataccggtgctaagtatcacattggcgatacggtagaagtg
caagttgctgcggttaatctggatgagaaaaaaattgatttagcattagccggcgcaaat
gccgttataaaacgtgctaaaccacagacaaaaggtaaaagctcggataagcataaacgc
ggtaagcgctctgctggcaaatcagcatcacaagacgcaaaagcaagttttgatgaaaaa
gctaaaccaagtaaaaaaccggtgaaagctgccgacaaagctagcgataaaacaacggct
aaagcgaaaaagcgcaaggcgagaaaaaagcgccctggtaaaaatgcacgtaaagcagat
acttag
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