Cognaticolwellia beringensis: B5D82_09250
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Entry
B5D82_09250 CDS
T05628
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cber
Cognaticolwellia beringensis
Pathway
cber03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cber00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B5D82_09250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cber03021
]
B5D82_09250 (rpoC)
03400 DNA repair and recombination proteins [BR:
cber03400
]
B5D82_09250 (rpoC)
Enzymes [BR:
cber01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B5D82_09250 (rpoC)
Transcription machinery [BR:
cber03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B5D82_09250 (rpoC)
DNA repair and recombination proteins [BR:
cber03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B5D82_09250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ASP47923
UniProt:
A0A222G8I5
LinkDB
All DBs
Position
2188321..2192526
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLKFLKQQNQTEEFDGIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTTLEKSQILTEEEYLDALEEHGDEFDALM
GAEAVLALLQQIDLDGEVAQMREELPEIGSETKRKKITKRLKLMEAFAASGNKPEWMIMN
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREGAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQMEA
RTLMMSTNNVLSPANGDPIIVPSQDVVLGLYYLTRDRVNGLGEGMIFTDIKEAEKAYRTG
FAELHARVKIRITEHIRNAEGVLEPKTTLRDTTVGRAILWQVCPDGMPYDLIDQPLGKKP
ISKLINHAYRNLGLKDTVIFADQIMYTGFHYAMIAGASVGIDDMVIPAAKYTIIEDSEEE
VKEIQTQFEQGLVTQGEKYNKVIDIWSSANEKISKAMMDNLSKETVINRDGEPEEQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTLDGLQMTPLIEGGDVVEPLRERVL
GRVVAEDVVKPGTDEVLLPRNTLIDEALCDFIEENSIDQMKVRSIITCKTDFGICAHCYG
RDLARGHMINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNTGTLKL
QNAKFVTNSADHLVITSRSSELTVIDELGREKERYKVPYGTILNKKDGEAITAGDIIANW
DPHTHPIITEVGGKVQFVELVDGVTMVRQTDELTGLSSIVVTEAGQRNTAGKEMRPAVKL
VDAKGNDVMIAGTEIPAQYFLPGNAIINLEDGAEVGIGDALARIPQASSKTRDITGGLPR
VADLFEARKPKLPAILAEKTGIIAFGKETKGKVRLLITQPSGEVYEEMIPKMRQLNVFEG
ESVLKGEVIADGPESPHDILRLRGVAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQMI
RKCEILDAGDSNFLKGEILEVARVNISNRELEAEGKQPAEYEMQMMGITKASLATESFIS
AASFQETTRVLTEAAVAGKKDKLRGLKENVIVGRLIPAGTGYSYHQERARAKNAVPVEEV
TVSADDAAQALTDALNADLSS
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaaatcaaacagaagagttcgatggtatt
cgcatcggactagcttcacctgacatgattcgttcatggtcatttggtgaggtaaagaaa
cctgagacgattaactatcgtacttttaagccggaacgtgatggtttgttctgtgcgcgt
atatttggcccagttaaagattacgaatgtctttgtggcaaatacaaacgccttaagcat
cgtggtgtaatttgtgaaaaatgtggcgttgaagttacattaactaaagttcgtcgtgac
cgtatgggtcatatcgaattagcaagcccagttgctcacatttggttcttaaagtcattg
ccatcacgtatcggtctattattagacatgacgttacgtgatattgagcgtgtactttac
tttgaatcttatgttgttaccgaacctggtatgacaacattagagaaaagccaaattcta
accgaagaagaatatcttgatgcgttagaagagcacggtgacgaattcgacgcccttatg
ggtgctgaagcggtacttgcgttattacaacagatcgatcttgacggcgaagtagcgcaa
atgcgtgaagagttgcctgagattggttctgaaactaagcgtaagaaaatcactaaacgt
ttaaaattaatggaagcattcgcagcatcaggtaacaagcctgagtggatgatcatgaac
gttttaccaattttaccaccagatttacgtccgttggtaccattggatggtggccgtttt
gctacctctgatttgaacgatttataccgtcgtgttattaaccgtaacaaccgtttaaaa
cgtcttcttgacctagtagcaccagatatcatcgtacgtaacgaaaagcgtatgttgcaa
gagtctgttgatgcattactagataatggtcgtcgtggtcgcgcaattaccggttctaac
aaacgtcctcttaaatcacttgccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttattgggtaaacgtgtagattactctggtcgttctgtaattactgttggtccaaca
ctacgtttgcatcaatgtggtttaccgaaaaaaatggcattagagttattcaagccattt
atttacggtaaattagaagcgcgtggattagccacaacaatcaaagctgctaagaaatta
gtagagcgcgaaggcgctgaagtttgggatgtacttgacgaagtaattcgtgaacatccg
gttatgcttaaccgtgcaccaacacttcatagattgggtatccaagcgtttgaacctgtc
ttaattgaaggtaaagcgattcatttgcatccattggtttgtgcggcatataacgccgat
ttcgatggtgaccaaatggcggtacacgtaccgttgacaatcgaagcacaaatggaagca
cgtacgttgatgatgtcaacgaacaacgtactttcaccagcgaacggtgaccctatcatc
gtaccatcacaggatgttgtattaggtttatattacctaacgcgcgatcgtgttaatggt
ttaggtgaaggtatgatttttaccgacatcaaagaagctgaaaaagcataccgtacaggt
tttgctgaacttcatgcacgtgtaaaaattcgtattactgaacatattcgtaatgctgaa
ggcgtacttgaaccgaagacaactttacgtgatacgacagtaggccgtgcaatcttatgg
caagtatgtccagacggcatgccttatgatcttattgatcagccactaggtaaaaagcca
atttcaaaactgattaaccatgcgtaccgtaacttgggacttaaagatactgttatcttt
gctgaccaaattatgtatacaggtttccactacgcgatgatcgcgggtgcttcagttggt
atcgacgatatggttattcctgcggcgaaatacaccatcatcgaagattcagaagaagaa
gttaaagaaattcaaactcagttcgagcaaggtcttgtaactcagggtgaaaaatacaac
aaagtaattgatatttggtcttctgccaacgagaaaatctcgaaagcgatgatggacaac
ttatcaaaagaaacagtgataaaccgtgatggtgagccagaagagcaagactctttcaac
tcaatctacatgatggcggattctggtgctcgtggtagtgccgctcagattcgtcagctt
gcaggtatgcgtggtttgatggctaaaccagatggttcaatcatcgaaacaccaatcacc
gctaacttccgtgaaggtttgaacgtattacaatacttcatctctactcatggtgcgcgt
aaaggtttggctgatacggcattgaaaacagctaattcgggttacttaactcgtcgttta
gttgatgttgcacaagatttggttgttaccgaacatgattgtggcacattagacggtcta
caaatgacaccattgattgaaggtggtgatgttgttgagccgttacgtgaacgtgttctt
ggtcgtgttgtagctgaagatgttgttaaaccaggtactgatgaagtgttattaccgcgt
aatacacttattgacgaagctttatgtgatttcattgaagaaaactcaatcgatcaaatg
aaagtgcgttcaatcattacttgtaaaacagattttggtatttgtgctcattgttacggc
cgtgatttggctcgtggtcatatgatcaaccaaggtgaagcgattggtgttgtggcagca
caatctatcggtgaacctggtactcagttaaccatgcgtacgttccatatcggtggagct
gcatctcgtgcatctgctgaaaacaacgtacaagttaagaacacaggtacactgaaacta
caaaacgctaaatttgtaactaactcagcagatcacttagtgattacttcacgttcatct
gaattgacagtaattgatgagcttggtcgtgagaaagaacgttacaaagtgccttacggt
accattcttaataagaaagatggcgaagcaattacagcaggcgacatcattgctaattgg
gacccgcatacgcatccaattattactgaggttggtggtaaggttcaattcgttgaactt
gtcgatggcgtaactatggttcgtcaaactgatgaacttactggtttatcaagtatcgta
gtcactgaagctggccaacgtaacaccgcaggtaaagaaatgcgccctgcagttaagtta
gtcgatgctaaaggcaacgatgtgatgatcgctggtactgaaattccagcacagtacttc
ttaccaggtaacgcgattattaaccttgaagatggtgcagaagttggtattggtgatgcg
ttagcacgtattccacaagcatcgtcaaaaactcgtgatattactggtggtctgccacgt
gtagcagatttatttgaagcgcgtaagcctaagcttccagctatcttagctgagaaaaca
ggtattattgctttcggtaaagaaactaaaggtaaagtgcgtttacttatcactcaacca
agtggtgaagtatacgaagagatgatccctaaaatgcgtcaattaaacgtgtttgaaggt
gaatctgtacttaaaggtgaagttattgccgatggtccagagtctccacatgatatcttg
cgtttacgtggtgttgcaccagtagctaactacattgttaacgaagtacaagaagtatac
cgtttacaaggtgttaagattaacgataaacacattgaagttatcgtacgtcaaatgatc
cgcaagtgtgagattttagacgccggtgatagtaacttccttaaaggtgaaatcctagaa
gttgcgcgtgtgaatatctctaatcgtgagttagaagctgaaggcaaacaaccagctgaa
tacgaaatgcaaatgatgggtattactaaagcatcattagcaactgagtcattcatctcg
gcggcatctttccaagaaacgacgcgtgtacttacggaagcagcagtagctggtaagaaa
gacaaacttcgtggcttgaaagagaatgttattgttggtcgcttaatcccagccggtaca
ggttactcttatcatcaagaacgcgcgcgtgctaaaaacgccgttcctgttgaagaagtt
acagtatcagctgacgacgcagcgcaagcactaacagatgctttgaatgcagatttatcg
tcatag
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