Cognaticolwellia beringensis: B5D82_13385
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Entry
B5D82_13385 CDS
T05628
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cber
Cognaticolwellia beringensis
Pathway
cber03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cber00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B5D82_13385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cber03400
]
B5D82_13385
Enzymes [BR:
cber01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B5D82_13385
DNA repair and recombination proteins [BR:
cber03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B5D82_13385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASP48675
UniProt:
A0A222G9U8
LinkDB
All DBs
Position
complement(3169731..3173240)
Genome browser
AA seq
1169 aa
AA seq
DB search
MSKNVSLFSPVLAKARGKSADKKVWQNLPGSSATVAIFHGALSTQQPILLLTHDTPSALR
LEQELASLNRQAQLPICLFPDWETLPYDTFSPHQDIISQRLATLYQLSRMDKGIVIVPIS
TLIQRLAPKQYIEANSLIIQKGDKKDLHQLRQSLEASGYRCVDQVMEHGEFSARGAILDI
FPMGSNTPFRLDFFDDEIDEIRLFDPENQRSSDKVDGINLLPAHEFPTDTDGTNLFRSQY
REQFTSTIDKESIYHQVSNGIMPAGIEYYLPLFFEQTNTLCDYLADNTLVIISGDIDKAL
THYWTDIDYRYEDRRYDPTRPLLPPSQLFLNSEELYSALKPFDRINLKPDVKEDEVKASQ
VQFDVHALPDLTIDHKLKQPFELLNNFVASKETPNKLLFVAESQGRRESVLELLERNKIK
PNIFDTIEDFVNSDAPHGITVNALSAGFIFQAKGSAKKNAIALITEAELLGDRVRQTRRR
NKQQEIQNDAIFKNLAELSIGQPVVHIDHGIGRYMGLQTIENSGITTEFLVLSYAKEAKL
YVPVASLHLISRYSGADAEHAPLHKLGNDTWSKAKQKAAEKVRDVAAELLDIYAKRASNH
GYSFKRDKDEYRAFADSFGFEETFDQEQAINAVISDMLSPKAMDRLVCGDVGFGKTEVAM
RAAFVAVNDGKQVAILVPTTLLAQQHYESFRDRFANWPVTIEVLSRFKTTKEQNVVIKDV
ESGQIDILIGTHKLLQNSIKYKDLGLLVVDEEHRFGVKQKEKIKQLRANVDILTLTATPI
PRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRERDDALIRESILREVLRGGQVYFLHNNV
DTIDKTAADIQLLLPEAKIITAHGQMRERELERVMGDFYHQRYNVLVCTTIIETGIDVPT
ANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRMTKDAKKRLEAIASLEDL
GAGFTLATHDLEIRGAGELLGEDQSGSMSQVGFTLYMEMLDAAVAALKDGKELSLDQVTK
TQTEVDLRVAALLPDDYIFDVSLRLSLYKRIASCKNKQALDDVQVELIDRFGLLPQAAKN
LVHIAKLKLKAEKLGITRIDAGPAGGTFEFSADTKVDHMFIFGLIQQQPKIYKMDGANKL
KFKQVTEDAKSRFILITTMLNELAKHLRP
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaatgttagccttttcagtccagtattagctaaagcccgcggtaaaagtgcc
gataaaaaagtttggcaaaatctccctggtagtagtgcaacggtcgctattttccatggc
gcgttatcaacacaacagccaatacttttgctgactcatgacaccccatcggcattgcgt
ttagagcaagaacttgccagtttaaatcgacaagcacaattacctatttgcttatttcct
gattgggaaacgttaccgtacgatacattttcgccacaccaagatattatttctcagcgt
ttagccactttatatcagttatcgcgcatggataaaggcattgttattgtgcctatttcc
accttaatacagcgtttagcgcctaaacaatatattgaagcgaatagcttaatcattcaa
aaaggcgataaaaaagatttacatcaactaagacaaagcctagaagctagcggctaccga
tgtgttgatcaagtgatggaacatggagagttttctgcccgtggtgccattcttgatata
tttcctatgggcagtaacaccccattcagattagacttttttgatgacgaaattgatgaa
attcgtttgtttgacccagaaaaccagcgttcgagtgacaaagttgatggcattaactta
ttacccgcccatgaatttccaaccgatactgacggcactaatttatttcgtagccaatac
cgcgaacaatttactagcacaatagataaagaatctatttatcaccaagtcagtaacggt
attatgccagcgggcatagagtattatttgcccttattttttgagcaaaccaatacctta
tgtgactacttagctgataacactttagttattatcagtggcgatattgataaagcctta
acacattactggaccgatattgactaccgctacgaagatagacgttacgaccctactcgg
ccattattaccacccagtcagctatttttaaatagtgaagaactttacagcgctttaaaa
ccttttgaccgcatcaatttaaaacctgacgttaaggaagatgaagtaaaagcatctcaa
gtacagtttgacgttcatgcattacctgatctgaccatagatcataaattaaagcagcct
tttgaattacttaataactttgttgctagtaaagaaacgccaaataaactgctatttgtt
gcggaaagccaaggtcgacgtgaaagtgttttagaattattagagcgtaacaaaataaag
ccaaatatctttgatactattgaagattttgtaaatagtgacgcgccacacggtattacc
gttaacgccttaagtgctggctttatatttcaagccaaaggcagtgcgaaaaaaaatgca
atcgctttaatcacagaagcagagttgctcggcgatcgtgttcgccaaacccgtcgtcgt
aataaacaacaagaaattcaaaacgacgcaatatttaaaaatttagccgagctaagtatc
ggtcaaccggttgttcatattgaccatggtattggccgttacatgggtttacaaaccata
gaaaacagcggtattaccacagaatttttagtgctcagttacgctaaagaagccaaactt
tatgtgcctgttgcttcactacatttaattagtcgctactcaggcgcagacgccgagcac
gcacctttgcataaattaggtaacgatacctggagcaaagccaaacaaaaagcggcagaa
aaagtacgcgacgtcgccgctgaattgttagatatttatgctaaacgtgccagcaatcat
ggttatagtttcaagcgtgataaagatgaatatcgtgcctttgctgatagttttggtttt
gaagaaacctttgatcaagaacaagcaataaatgccgtgatcagcgatatgctctcacca
aaagcgatggaccgattagtgtgtggtgatgttggctttggtaaaaccgaagtcgcaatg
cgcgcagcctttgtcgcggtaaatgacggtaagcaagtagcgatattagtgccaactacc
ttgcttgctcagcagcattatgaaagcttccgtgaccgtttcgccaattggcctgttacc
attgaagttttatcacgctttaaaaccaccaaagagcaaaatgttgttatcaaagacgtt
gaatctggccaaatagatattttaattggtacccataaacttttacaaaacagcataaaa
tataaagatctagggcttttagtggttgatgaagaacatagatttggtgttaagcaaaaa
gaaaaaataaagcagctacgtgctaatgtcgatattttaaccttaacggcaacaccaatt
cctcgtacgttaaatatggcgatgggtggcatgcgtgacttatcaataatcgcgacacca
ccagctaaacgattagccgtaaaaacctttgttagagagcgtgatgacgccttaattcgc
gagtcaatactgcgtgaagtgttacgtggtggccaagtctatttcttacataataatgtc
gatactattgataaaaccgccgctgacatacagctattattacccgaagcgaaaattatt
acggctcatggccaaatgcgtgagcgtgaacttgaacgtgtaatgggcgacttttatcac
caacgttataacgttttagtctgtactaccattattgaaaccggcattgatgtacctacc
gccaataccataataatggaccgagcagaccatttaggtttagcgcaattgcatcaatta
cgtggccgtgttggtcgttcgcatcaccaagcttatgcttatttattaacaccgcacgaa
aaacgcatgaccaaagatgcgaaaaaacgccttgaagccatagcgtcattagaagactta
ggcgcaggatttactttagcaacccatgatttagaaattcgtggtgccggagagctatta
ggcgaagatcaaagtggttcaatgagccaggtcggttttacgctttacatggaaatgctc
gatgccgcggttgctgcgcttaaagacggtaaagaattatctttagaccaagtaacaaaa
acgcaaacagaagtagatttgcgcgtagctgctctcttgccagacgattacatattcgat
gttagtttacgattaagcttatataaacgcattgccagctgtaaaaataagcaagcgtta
gacgatgtgcaagttgaactgattgaccgattcggtttattaccccaagcagcgaaaaat
ttagtgcatattgctaagctaaaactcaaggctgaaaaattgggtatcacccgaattgat
gctgggcctgcaggtggaacctttgaatttagtgccgatacaaaagtagatcatatgttc
atttttggtttaattcagcagcagccgaaaatatataaaatggatggagcgaataagttg
aaatttaaacaagtcactgaagatgctaaatctcgctttattttgatcacaaccatgcta
aacgaattagcgaaacatttacgcccttaa
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