Cercospora beticola: CB0940_00880
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Entry
CB0940_00880 CDS
T09388
Name
(RefSeq) mRNA cleavage and polyadenylation specificity factor complex subunit pta1
KO
K06100
symplekin
Organism
cbet
Cercospora beticola
Pathway
cbet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CB0940_00880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbet03021
]
CB0940_00880
03019 Messenger RNA biogenesis [BR:
cbet03019
]
CB0940_00880
Transcription machinery [BR:
cbet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CB0940_00880
Messenger RNA biogenesis [BR:
cbet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CB0940_00880
U7-dependent histone pre-mRNA processing factors
CB0940_00880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
eIF_4G1
Motif
Other DBs
NCBI-GeneID:
35424692
NCBI-ProteinID:
XP_023459317
LinkDB
All DBs
Position
1:2370509..2373158
Genome browser
AA seq
743 aa
AA seq
DB search
MASPPAASSQMLQQLNSAREISLKDHTLYPKVIPGIIPIISQSSTPLELRRWGADFLAET
FASQAVTPDEKQQMSLGVLDTLKGYLNRRELMGEDEDKSVVKSAVQCAASIYPHVFRHTV
SNTADSDTWGKVAAIKSSILRRMDTAPPGVRICCIKFVAAVVQTQTPGMIADPRRPENNE
ISLALVPRDHPVIPPANLEAEASGLLDRLLGVLQDNSSDPLIITATLNALSNLVHRRASI
SSKILSAILAFIPPTPPSGSIKDKLSFKSMTRTAMSFVLNCIKRNPNGPFGPRLQQHHER
LKHNLNAVLSENPQLKRAAPDEPIDGLDDAKRQRLNKDATNGTSILQQQTPSYAALPAGP
ISLAQLWTLTTNQNAASFHVERVPRDSVIQLVQALIPSIPDDKLSMAVNIMRSRLLSLNK
ASDNAKGPPAGAIGASDERPKNEYPSGESEQVANRLDNAPPEGPDGDVAIGPFSLPAPPP
LSSQEREEYSSMAVQRVFATLSDLDREARTKGKPVLSQYGLNRLATTAAIGHDRDGWIVM
ATRLATRASFDLEGDQAIVKTEDYDGTLIKKGHKTTLNYALRAALLTYVMENFRARIDAA
IIWLNEEWYSEKLLQKQRQDDGEDVEDDDLPNYWHWTLRLLDMMMPYFDVKDGRVLIRLL
SEVPAVNRAIFDRVKKIAEDPERILISTNALLYLIMFRPPVRQMAIDCAEEMYRENSDAR
SAAKKLLAKWRPGVVEQAGAAEA
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgccaccagcggcgtcgtcgcagatgctgcaacagctcaattctgcgcgcgag
atcagcctcaaagatcacacgctataccccaaagtgataccagggatcattccgatcatc
tcgcagagctcaacgcccctcgagttgcggagatggggcgcagactttctggcggagacg
ttcgcgtcccaggcggtaacaccggacgagaaacagcaaatgtccttgggcgtgcttgac
acgctgaagggctatctgaacaggagagagttaatgggcgaagatgaggacaagagtgtt
gtgaagagtgctgtgcaatgcgccgcgagcatatacccgcacgttttcagacacacggtc
agcaatacggccgacagcgacacatggggcaaggtagccgcgattaaaagcagcatactg
cgcagaatggacactgcgccacccggagtgcgcatatgttgtatcaagtttgtcgctgct
gtggtgcagacccagacaccgggcatgatagcagatccacggcggccagaaaacaatgag
atcagtctagcattggtcccaagagatcatcctgtgattccgcctgccaacctggaagca
gaagcatcgggacttctggatagacttcttggtgtgctccaggacaactcaagtgatcca
cttatcattactgccacgctcaatgcgctctccaatttggtgcatcgacgtgcgagcata
tcaagcaagattctctctgcgatcctcgctttcatcccgccgactccaccaagcgggagc
atcaaagataagctctcgttcaagagcatgacgcgaacagctatgtcttttgtcctcaat
tgcatcaagaggaacccaaatggcccgttcggcccccgattacagcaacaccatgaacgg
ttgaaacacaatctcaatgcggtgctctcagaaaacccacaactcaagcgagcagcgccg
gacgagccgatagatggcctggacgacgctaaacgccaaaggctcaacaaggacgccacg
aatggaacctcaatattgcaacaacagacaccttcttatgcggccttaccagccggtccc
atatcactagcacagctgtggacactgaccaccaaccagaatgctgcgtcgtttcatgtc
gaaagagtgccacgtgacagcgtgatacaacttgttcaggcgctgataccttctataccg
gatgataagctgtcaatggccgtgaacatcatgcgatcgcgtttgctgagcctgaacaag
gctagcgacaacgccaagggaccaccagccggagcgattggggccagcgatgagcgtccg
aaaaacgaatatccttctggtgaaagtgagcaagtggccaacagactcgataacgctcct
ccggaagggcctgatggtgacgtggcgattggtcccttcagtctacctgcacctccaccc
ctatcgagccaggagagggaggagtactcttccatggccgtgcaacgagttttcgcaaca
ctatcagacttggatagagaagctagaaccaagggcaagccggtcctgtcacaatatggc
cttaatcgccttgcaacgacagcagccatcgggcatgatcgagatggatggatagtgatg
gctacaaggctggccactcgagcctccttcgacctcgagggggatcaagctatcgtcaag
acagaggactacgatggcacgctgatcaagaaaggccacaaaactacactaaattatgct
ttgcgagcggctttgctcacgtacgtgatggagaattttcgagcccgcattgatgcagcc
atcatctggttgaatgaagagtggtattccgagaagcttttgcagaagcaaagacaggac
gacggcgaggacgtggaagatgacgacttgccgaattactggcattggacgctgcgttta
ctggacatgatgatgccgtacttcgacgtcaaagacggacgcgtgcttattaggctgctc
tccgaagtgcccgccgtgaaccgagccatctttgatcgagtcaagaagatcgccgaagat
ccagagcggatcttgataagcacgaatgcgctgctatatctaatcatgtttcggccgcca
gtgcggcagatggccattgattgtgccgaggaaatgtacagggagaatagcgacgcgaga
tcagcggcgaagaaacttcttgcaaaatggaggccaggcgtggtggaacaggcaggcgct
gctgaagcgtga
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