KEGG   Cercospora beticola: CB0940_01516
Entry
CB0940_01516      CDS       T09388                                 
Name
(RefSeq) ATP-dependent RNA helicase sub2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cbet  Cercospora beticola
Pathway
cbet03013  Nucleocytoplasmic transport
cbet03015  mRNA surveillance pathway
cbet03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cbet00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CB0940_01516
  09122 Translation
   03013 Nucleocytoplasmic transport
    CB0940_01516
   03015 mRNA surveillance pathway
    CB0940_01516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbet03019]
    CB0940_01516
   03041 Spliceosome [BR:cbet03041]
    CB0940_01516
Enzymes [BR:cbet01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CB0940_01516
Messenger RNA biogenesis [BR:cbet03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CB0940_01516
Spliceosome [BR:cbet03041]
 Complex C
  Other components
   EJC/TREX
    CB0940_01516
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CB0940_01516
SSDB
Motif
Pfam: Helicase_C DEAD Cas3-like_C_2 YihI
Other DBs
NCBI-GeneID: 35425326
NCBI-ProteinID: XP_023458407
UniProt: A0ABZ0NBP7
LinkDB
Position
1:<3899325..>3900135
AA seq 252 aa
MLADMRRDVQEIFRATPTQKQVMMFSATLSNQTKPVCKKFMQNPLEIYVDDETKLTLHGL
QQYYVKLTEDEKNRRLNDLLDTLDYNQVIIFVKNTLRANELDRLLRECSFPSVTVHSQMS
QDERIKRFTAFKNFAHRICVSTDVFGRGIDVEKINLAINYDMPDSTSNKEAERQKTSGAD
KGSAEYKESIAQAADTYLHRVGRAGRFGTKGVAISFISSDRDQEVLNAIEARFERKVAEY
PADGLVQQKDAE
NT seq 759 nt   +upstreamnt  +downstreamnt
atgctggcagacatgcgccgtgatgtccaggagatcttccgtgccactccaacacaaaag
caggtcatgatgttttcggcaacactgtccaaccagaccaaacccgtctgcaagaagttc
atgcagaacccacttgagatctacgtcgatgacgagactaagctcactctgcatggtctt
cagcaatactatgtcaagcttaccgaggacgagaagaatcgacgtctcaatgatctgctt
gataccctggactacaaccaagtcatcatcttcgtcaagaacacactccgtgcgaacgag
cttgaccgtctcctgcgcgaatgcagcttcccttccgtcactgtgcactcgcaaatgtcg
caagacgagcgcatcaagcgcttcacggcattcaagaacttcgcccatcgtatctgtgtc
agcactgacgtgttcggccgtggtatcgatgttgagaagatcaacttggccatcaactat
gacatgccagactcgacctccaacaaggaagctgagcgtcagaagaccagtggagccgac
aagggctcagcagagtacaaggaatccattgcacaagctgctgacacttacctccaccgc
gtgggccgtgctggtcgtttcggaacgaagggtgttgctatcagcttcattagctctgat
cgcgaccaggaagtgctcaacgctatcgaggcgcgattcgagaggaaggtcgcagagtac
ccggctgacgggctcgtccagcagaaggatgcggaatag

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