Cercospora beticola: CB0940_04887
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Entry
CB0940_04887 CDS
T09388
Name
(RefSeq) ATP-dependent RNA helicase mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cbet
Cercospora beticola
Pathway
cbet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CB0940_04887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbet03019
]
CB0940_04887
03041 Spliceosome [BR:
cbet03041
]
CB0940_04887
03009 Ribosome biogenesis [BR:
cbet03009
]
CB0940_04887
03016 Transfer RNA biogenesis [BR:
cbet03016
]
CB0940_04887
Enzymes [BR:
cbet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CB0940_04887
Messenger RNA biogenesis [BR:
cbet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CB0940_04887
Spliceosome [BR:
cbet03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CB0940_04887
Complex C
U4/U6.U5 tri-SnRNP related factors
CB0940_04887
Ribosome biogenesis [BR:
cbet03009
]
Eukaryotic type
Pre-60S particles
Helicases
CB0940_04887
Transfer RNA biogenesis [BR:
cbet03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CB0940_04887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
Helicase_dom4_arc
ATPase_2
nSTAND3
Imm47
Peptidase_U49
Motif
Other DBs
NCBI-GeneID:
35428695
NCBI-ProteinID:
XP_023451859
LinkDB
All DBs
Position
4:complement(2944258..2947859)
Genome browser
AA seq
1081 aa
AA seq
DB search
MDDDLFDVFEDKPQAANTKKAGKKRSLNGDVKQNGGDTNMTDASSVSPAAVGSKTDARDF
AGDANGDTPQGDDTDARGQKRPRLEDEPEPVVTDEFETEQQREVAAAAGLQAQQEGSAVT
IKHQVRHQVSLPPDCEYVPISQHKRPENPARVWPFALDPFQEVSIASIERNESVLVSAHT
SAGKTVVAEYAIAQCLKNNQRVIYTSPIKALSNQKYREFQAEFGDCGLMTGDVTINPTAT
CLVMTTEILRSMLYRGSEIMREVAWVVFDEVHYMRDKTRGVVWEETIILLPDKVRYVFLS
ATIPNAMQFAEWITKTHNQPCHVVYTDFRPTPLQHYFFPAGADGIHLIVDEKAVFKEENF
NKAMAAIAEKAGDDGSDPMAKRKGKGKDKKTNKGGRKDGPTDIYKIVKMIMMKNYNPVIV
FSFSKRECENYALQMSQLAFNDESEKAMVSKVFDSAIEMLSEEDKQLPQIQHILPLLRRG
IGIHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGITQRW
VTPSEFIQMSGRAGRRGLDERGIVIMMIDEKMDPPVAKEIVKGEQDKLNSAFHLGYNMIL
NLMRVEGISPEFMLERCFFQFQNAASVSGLEKQLIELEQKRADVIIEDEPQVKEYYDLRQ
NLDTYSAEMKQVITHPQYLCKFLQSGRLVKVKYKNYDFGWGAVVNFVRVKPGRGQNEDDV
QAGQSVIVDVLLNVAADSTSVPSSQLKDDLPPGVRPCAPGEKGKMEVVPVMNGIIDSVGH
LRVFLPNDLRTTEQRNTVRKALEEVARRFPDGVAILDPIENMGINDDGFKKLLRKIEVLE
HKLLSHPLHKSERLDELYDQYASKIAITNEIKEARKKMSDAMAVLQLDELKNRKRVLRRL
GFTNDADVVQLKARVACEISTGDELVLSELLFNRFFNELTPEQCAATLSAFIFEEKSDEA
PALKEELAKAYREIQAQARQIAKVSMECKVLVNEEEYLQSFKHQLMEVVLSWCNGASFAD
ICKMTDVYEGSLIRLFRRLEELLRQMAQASKVMGSEELEKKFEGALGKVRRDIVAAQSLY
L
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgacttgttcgacgtgttcgaggacaagcctcaggcggccaacaccaaaaag
gccggcaagaagaggtcactgaatggtgatgtcaagcagaatggcggcgacacgaacatg
accgacgcttcgagtgtgtctccagcagcagtcggttcgaagaccgacgcgagagacttc
gctggagacgccaatggcgacacgccgcaaggagacgacaccgatgcccgcgggcagaag
cgaccacgattggaggacgaaccagagccggtcgtgacagatgagttcgagacagaacag
cagcgcgaggtcgcggcggcggcagggttacaggcacaacaagagggcagtgccgtgacg
atcaagcatcaagtgcgccatcaagtgtccctgccgccggactgcgaatatgtgcccatt
tcacaacacaagcggccagagaatccggcgcgcgtttggcccttcgccctcgatcctttc
caggaggtctcgattgcatccatcgagcgaaacgagagtgtattggtctcggcacacact
tcagcaggaaagactgtggtggcagaatatgcgatcgcgcaatgcctgaagaacaaccag
cgtgtcatctacacgagtcccatcaaggcgctcagcaaccagaagtaccgtgaattccag
gcggagttcggcgattgtgggttgatgaccggagatgtcaccatcaaccctacagcgacc
tgcttggtcatgacgactgagattttgcgatctatgctgtaccgcggcagcgagatcatg
cgcgaggtcgcgtgggtggtctttgacgaggtacactacatgagagacaagacacgaggt
gttgtgtgggaagagacaatcatcctgcttcccgacaaggttcgctacgtcttcctgtcc
gccactatccccaacgccatgcagttcgccgagtggatcaccaagacgcataatcaacca
tgccacgtggtgtacaccgacttccgacctacgcctcttcaacactacttcttcccagct
ggtgccgacggcattcatctgattgtcgatgagaaggctgtgttcaaggaggagaacttc
aacaaggctatggccgccatcgcagagaaagccggcgacgatgggtccgatccaatggcg
aagcgcaaaggcaagggcaaagacaagaagacgaataagggaggccgcaaagatggtccg
actgacatctacaagatcgtcaagatgatcatgatgaagaactacaatcccgtcatcgtc
ttttccttctcgaagcgcgagtgcgagaactatgctctgcaaatgtctcaactggcgttc
aacgacgaatctgaaaaggcgatggtgtcgaaagtctttgactcggccatcgagatgttg
tcagaggaagacaagcagcttccgcagattcagcacattctgccacttctccgtcgtggt
attggtattcaccactcaggtctgctgcccatcctcaaggagaccatcgagattctgttc
caggaaggcctgatcaaggtcctgtttgcgacagaaaccttctccattggtctcaacatg
cctgccaagacagtcgtgttcacgtctgtgcgcaagtttgacgggattacgcagcgatgg
gtgacaccttcggagttcattcaaatgtctggccgtgctggtcgtcgtggtcttgatgag
cgtggtattgtgatcatgatgatcgacgaaaagatggacccaccagtcgccaaagagatc
gtcaagggcgaacaagataagctcaactcggcattccatcttggttacaacatgattctc
aatctgatgcgtgtcgaaggaatcagtccggaattcatgttggagcgctgcttcttccaa
ttccagaatgcagcatctgtctccggccttgagaagcaactcattgagcttgagcagaag
cgtgcagatgtgatcatcgaggacgagccacaggtgaaggaatactacgatctcaggcag
aatctggacacttattctgctgaaatgaagcaggttattacccatccgcaatatctgtgc
aagttcttgcaatccggtcgcctggttaaggtgaaatacaagaactacgactttggctgg
ggcgcggtcgttaatttcgtccgcgtcaagccaggccgaggtcagaacgaagacgacgtt
caagctgggcagtctgtgatcgtcgacgtgcttctcaacgttgctgcagacagtacctca
gtcccttcaagccagctcaaggacgatttgccacctggagtccggccttgcgcacctggc
gagaagggcaagatggaagtcgtaccagttatgaacggcatcatcgacagcgtgggtcat
cttcgcgtgtttctgcccaatgatcttagaacaaccgaacaacgaaacaccgtacgaaag
gccctcgaggaagtggctcgccgctttccagatggcgtcgcgattctcgacccgatcgag
aatatgggcatcaacgatgatggcttcaaaaagctactgcgcaagatcgaggtgctcgag
cacaagctgctctcgcatccgcttcacaagagcgagagactggacgaactctacgaccag
tacgcgtccaagatcgctattacgaatgagatcaaagaggcgcgaaagaagatgtcggat
gcgatggctgttcttcagctcgacgagttgaagaaccgcaagcgcgtgcttcgtcgtctg
ggcttcaccaacgatgccgatgtcgttcagctgaaggcccgtgtcgcttgcgagatctcc
actggcgatgagttggtgctttccgagctgcttttcaatcgtttcttcaacgagctcacg
ccagagcaatgcgcagccacactttcagcattcatcttcgaggagaagagtgatgaggcc
ccagcactcaaggaggagctggccaaggcttacagagaaatccaggcacaagcacgccag
atcgccaaggtctcgatggaatgcaaggtactagtgaacgaagaggagtaccttcagagc
ttcaagcaccagttaatggaggttgtgctctcctggtgcaacggcgcatctttcgccgat
atttgcaaaatgaccgatgtctacgagggctccctcatccgacttttccgccgcctcgaa
gaactccttcgccaaatggcccaggcctccaaggtcatgggctccgaggaactggagaag
aaattcgagggcgccttaggcaaggtcagacgcgacatcgtcgccgcacagagtttgtac
ttgtag
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