Cercospora beticola: CB0940_07340
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Entry
CB0940_07340 CDS
T09388
Name
(RefSeq) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cbet
Cercospora beticola
Pathway
cbet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CB0940_07340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbet03041
]
CB0940_07340
03009 Ribosome biogenesis [BR:
cbet03009
]
CB0940_07340
Enzymes [BR:
cbet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CB0940_07340
Spliceosome [BR:
cbet03041
]
Complex A
U2 snRNP components
U2 related factors
CB0940_07340
Complex B
CB0940_07340
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CB0940_07340
Ribosome biogenesis [BR:
cbet03009
]
Eukaryotic type
90S particles
Helicases
CB0940_07340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
SRP54
AAA_19
Flavi_DEAD
ResIII
nSTAND3
PhoH
AAA_30
T2SSE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
35431146
NCBI-ProteinID:
XP_023449195
LinkDB
All DBs
Position
5:1666781..1669311
Genome browser
AA seq
766 aa
AA seq
DB search
MAEEEKPRKSRFKRVKTSDDRDNPYLQHMYTDSDSSSGVHLNGGGANGHSSSNGASGDMS
TWKRHTTTAAMAKMAEDGPSNPFTGEQLSDRYFGILKVRRDLPVHAQRQEFLDMFQKTQI
LVFVGETGSGKTTQIPQFVLYDDLPQMQGKMVACTQPRRVAAMSVAQRVAQELDVKLGEE
VGYSIRFEDMTSEKTILKYMTDGMLLREAMNDHDLKRYSCIILDEAHERTLATDILMGLL
KEVVKRRPDLKIIIMSATLDAQKFQKYFNNAPLLAVPGRTHPVEIFYTPEPERDYVEAAL
RTVLQIHATEPEGDVLLFLTGEEEIEDCCRKISMEADEMIREAGAGPLKVYPLYGSLPPA
QQQKIFEPAPPPYQAGGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVE
SLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEGAFKKELIDQSYPEILRSNLANTVLEL
KKLGIDDLVHFDLMDPPAPETLMRALEELNYLACLDDEGELTHLGKLASEFPLDPALAVM
LISSPEFYCSNEVLSMTALLSVPQVFTRPAAKRKQADEMKSLFTHEEGDHLTMLNVYHAF
KGPAAQENAKQWCHDHYLSYRALQQADNVRMQLKRIMEREEIELVSTDFNDKNYYTNIRK
ALCAGFFMQVAKKDTSGKTYVTVKDNQSVLLHPSTVLGQDSEWVLYNEFVLTSKNYIRTV
TAVKPEWLLDIAPNYYDVDSFPKGEVQSSLRRTAQKMARRSEMKTR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagaagagaagcctcgcaagtcgcgctttaagcgtgtcaagacgtccgacgac
cgcgacaatccatacctccaacatatgtacaccgacagcgattcctcgagcggcgtgcac
ctgaatggtggcggcgcaaatggccactcgtcctccaatggcgccagtggagatatgagc
acatggaagaggcacacaacgacggcggctatggctaagatggcggaagacgggcccagc
aatcccttcactggcgagcaactgagtgatcgttactttggcatcctcaaggtccgacga
gatctccccgtgcatgcgcaaaggcaggagttcttggacatgtttcagaagacacagatt
ttggtatttgtcggagagacgggttcaggaaagacgacgcagatcccccaattcgtgctg
tatgacgatctgccccaaatgcaagggaagatggtggcatgtacgcagcctcgtcgtgta
gctgcaatgtcggtggctcagcgtgttgctcaagagttggatgtgaaactcggggaggaa
gtcggatacagcattcgtttcgaggacatgacgagtgaaaaaacgatcctgaagtacatg
acggacggtatgctgttgcgagaggcaatgaacgaccacgatttgaagcggtacagctgc
atcatacttgatgaagctcacgaaagaacactagccacggatatcttgatgggtctgctg
aaggaagttgtgaagaggaggcctgatttgaagattattatcatgtctgccactcttgat
gcacagaagttccagaagtacttcaacaacgcgcctttactggccgtgcctggacgaacg
catcctgttgagatcttctacactccggagccggagagagattatgtcgaggcagcactg
cgaacagtgttgcaaatccatgccacagaaccagagggagatgtcctgttattcttaacg
ggtgaagaggaaatcgaagactgctgtcgaaagatcagtatggaggctgatgagatgatt
cgagaagccggagctggacctctcaaagtatatccgctgtacggttctttgcctccagca
caacagcagaagatcttcgaacctgcgcctcctccatatcaagcgggcgggagaccgggg
cggaaagtcatcgtgtcgaccaacattgccgaaacttctttgaccattgacggtatcgtg
tacgtggttgatcctggctttagcaagcaaaaggtctacaatccccgaatacgcgtcgaa
tcacttctggtgtctcctattagcaaagcatcggcacagcagagagcaggtcgtgctgga
cgtacgagacctggtaaatgcttccgtctgtatactgagggtgcattcaagaaggagctc
attgaccagtcatacccagaaatcctgcgatcaaatttggccaacactgtgctggagttg
aagaagctcggcattgatgatctggtccacttcgatctgatggatccacctgcaccagaa
actttgatgcgtgctctggaggagctgaactatcttgcatgcctggatgatgaaggagag
cttacacatctcggcaagcttgcttcagaatttcctctcgatccggcactggcagtgatg
ctgatcagttctccggaattctactgctcgaacgaagtgctgtctatgactgcattatta
agtgttccacaagtcttcacccgtccggcggcaaagcgaaagcaagctgacgagatgaag
tcgctcttcacgcatgaagagggtgaccatctcacaatgctcaacgtctaccacgctttc
aagggaccagctgcgcaagagaacgcgaagcaatggtgtcatgatcactatctgtcctac
cgtgctctgcaacaagcagacaatgtccgcatgcagctgaaacgcatcatggagcgcgaa
gagatcgaactcgtcagcaccgatttcaacgacaagaattactacaccaacattcgcaaa
gcgctgtgtgctggcttcttcatgcaagtcgccaagaaggatacttcaggcaagacgtac
gtcacggtcaaggacaaccagtctgttctgttgcatccctcgactgtgctaggacaagac
agcgagtgggtgctgtacaacgaattcgtcctaacgagcaagaattacatccgaacagtc
actgctgtgaagccagagtggctgcttgacatcgcaccgaattactatgacgttgattcg
ttccccaagggagaggtgcagtcgagtttgaggagaacggcgcagaaaatggcgagaagg
agtgagatgaagactcgataa
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