Cercospora beticola: CB0940_10004
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Entry
CB0940_10004 CDS
T09388
Name
(RefSeq) Exosome complex exonuclease rrp6
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cbet
Cercospora beticola
Pathway
cbet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CB0940_10004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbet03019
]
CB0940_10004
Messenger RNA biogenesis [BR:
cbet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CB0940_10004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
DUF6987
Motif
Other DBs
NCBI-GeneID:
35433809
NCBI-ProteinID:
XP_023450611
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All DBs
Position
7:2863590..2866116
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AA seq
775 aa
AA seq
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MEDFGALETGIKSALTSTTRSAVSLANEDIPFQRSLDSAVGPALDQQNARLLGLAERLIG
AATSNTEITRPPRLKDLESVEGNWRAVVDVVDSLLERADTALDEFTGAVKRLSPAAETPK
NAKSSRNAPQRDQRIEKPQLLFEHVPTNNDEAPFKPLLETKPHAKAPLEKEPRIAEGETQ
PTYPHPYQHEIENYEYPARIYQQSEPIMYHPFDETTATFVDTEEALHDMLEELKQAKEIA
IDLEHHDSRSYIGIVSLMQISTRDKDWIVDTLKPWRRKLQCLNEVFADPNIIKVLHGAFM
DIMWLQRDLGLYIVGLFDTHHASRCLGYTGGSLAFLLKKFANVDAQKQYQTADWRVRPLP
KELFDYARSDTHFLLYIFDNMRNELIQRSNFELPDREGDKIYDVLQRSSEEALQRYEYPI
YDAELGQGVGWYKLLSRTPALLGKEQFSVFRAVHQWRDQVAREQDDSTHYIMPNHQIFSI
ARGMPTNRLALLGIATPASQTVRLRADELLSVVIKAKEAGKDGPEMMELLNQVEPQRPRK
MPRETTASASQPGIETAPSASALIVSTDVPIRSTASSFWGAAFESSAWDHTRSAPTASEI
SLAVPLPPLTAESFADASEIERQQPQREPTPEPVPRQQEDDVFILKDTSKKRKRATEPTD
GMAANSDEVAIVDEASVRAQQKAERKAAKRAAKMAAKAAGADASGKDEMQNGDDEVPFDY
ASAPSILNAPSERMSGKDRKKSQKQVNPYAKSMDAPKGLPRSQKEKAGRSMTFKK
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggaagacttcggtgcgctcgagaccggcatcaagtccgccctcacatcgacaacgcgc
agcgcagtatcgttggcgaacgaggacattccgtttcaacgatcactcgactctgctgtg
ggaccggctctggaccagcaaaatgcacgcctgctaggcctcgcagagcgactgatcgga
gctgccacgtcgaataccgagatcacgcgaccgccgaggctcaaggacctcgaatcggtg
gagggtaattggagagctgtggtcgatgtggtggatagtctgctggagcgcgcagatacc
gcgctggacgagttcacgggcgccgtgaagaggttgagtcctgcagcagaaacaccaaag
aacgcgaaatcgagtcgcaatgcaccgcagcgcgaccagcgcattgagaagccacagctt
ctattcgagcatgtgcccaccaacaacgatgaggcgcctttcaaaccgcttctggagacc
aagccccatgcgaaggcgccgctggagaaagagccgcggatagcagagggcgagactcaa
ccaacataccctcacccttatcaacacgaaatcgagaactacgaataccctgcgcgaata
tatcagcagagtgaacccatcatgtaccacccattcgacgagacgacagcgacgttcgtg
gacacggaagaggcgctacatgacatgttggaagagttgaaacaggcaaaggaaatcgca
atagatctggaacatcatgacagcaggtcgtatatcggcatagtgtcgctgatgcagatc
agcaccagagacaaagactggatagtggacacactcaagccttggagacggaaactgcag
tgcctgaacgaagtctttgcggatccgaacatcatcaaagtccttcacggcgcgttcatg
gacatcatgtggcttcaacgagatctggggctctacattgttggtcttttcgatacacac
cacgcttcgcgatgcctgggatatacaggcggtagcttggcattcctgttaaagaagttt
gccaacgtcgatgctcaaaagcaataccaaacagctgactggcgagtgcgacccctgccg
aaagagctgtttgattatgcccgcagcgatacacatttcctactgtacatcttcgataac
atgcgaaacgagctcattcagaggtcgaacttcgagctgccagaccgcgaaggtgataag
atctacgacgtcttgcagcgaagctctgaggaagcattacaacgatacgaatacccgatc
tacgatgcggaacttggtcaaggcgttggttggtacaagttgctttccaggacaccggcc
ctacttggcaaggagcagttctcggtcttccgagctgtacaccagtggcgagaccaggtc
gcacgagagcaagacgacagtacgcattacatcatgccaaaccaccagatcttcagcatt
gctcgcggtatgccgactaacagactggcattgctgggaattgcgacgcctgcctctcaa
acggtacggttacgcgccgatgagcttctcagtgtggtcatcaaagccaaggaagctggt
aaagatgggcctgagatgatggaactgctgaaccaagtcgagccacagcggccgcgaaag
atgccgagagaaactacagcgtcggcctcacagccaggaatcgagactgcacccagtgca
tctgcactgatcgtgtctacagacgttccgattcgaagtacggcttcatcattctggggc
gcggctttcgaaagcagcgcgtgggatcacacacgaagcgcgcccaccgcatcggagatc
tcattggctgtcccattgccccctctgacggcagagtcattcgcagatgcttcagagatt
gagcgacagcagccgcaacgtgagcccaccccggaaccagtacctagacaacaggaggat
gatgttttcatactcaaagacacgagcaagaaacgaaaacgtgccacagaacccacagat
ggaatggctgccaactccgatgaggttgctatcgtggatgaggcttcagtacgtgcgcag
cagaaagcggagaggaaggcagcaaagagagctgcgaagatggcggcgaaggctgctggc
gctgatgcatcaggcaaggacgaaatgcaaaacggagacgatgaggttcctttcgactat
gccagcgcaccaagcatactgaatgcaccaagtgagcggatgagcggaaaggatcggaag
aagtctcaaaagcaggtgaacccttatgcgaagagcatggatgctccaaaggggctacct
cgaagtcagaaggagaaagccggaaggagtatgaccttcaagaagtga
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