KEGG   Clostridium botulinum F Langeland: CLI_2990
Entry
CLI_2990          CDS       T00563                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
  KO
K03086  RNA polymerase primary sigma factor
Organism
cbf  Clostridium botulinum F Langeland
Pathway
cbf02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cbf00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    CLI_2990 (rpoD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbf03021]
    CLI_2990 (rpoD)
Transcription machinery [BR:cbf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CLI_2990 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_1 Sigma70_r1_2 HTH_PafC Exonuc_VII_L
Other DBs
NCBI-ProteinID: ABS42027
UniProt: A7GHF5
LinkDB
Position
complement(3166595..3167680)
AA seq 361 aa
MKEKKNNAKDKNEKMKLVRRLIDKGKKSGSLSYKEIMDELEEIDLSPEQIEKIYDVLESM
GVEVTGDMNDIDVKEEDIDLSVPEGIAIDDPVRMYLKEIGKVALLTSEEEIELAQRIEAG
DMVAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA
TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEVAKIMEMPV
DKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTL
TPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL
D
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgaaagaaaagaagaataatgctaaagataaaaatgaaaaaatgaagttagttagacgt
ttaatagataaaggtaaaaaaagtggatcattaagttataaagaaattatggatgaatta
gaagaaatagatttaagtccagaacaaatcgaaaaaatatacgatgtattagagtctatg
ggtgtggaagttacaggtgatatgaatgatatagacgtaaaggaagaggatattgattta
tcagttccggaaggtattgctatagatgatcctgttagaatgtatttaaaagaaataggg
aaagtagcattattaacttcagaagaagaaatagaattagcacaaagaatagaagcagga
gatatggttgctaagaagaaattagcagaggctaatttaagacttgttgtaagtattgca
aagagatatgtaggaagaggaatgttatttctagatcttatacaagaaggtaacctagga
ttaataaaagctgtagaaaaatttgactatagaaaaggttacaaatttagtacctatgct
acttggtggataaggcaggccattacaagggctatagcagatcaagcaagaaccataaga
ataccagttcacatggtagaaactataaataaacttataagagtatcaaggcaactatta
caagaactaggtagggagccacagccagaggaagtggctaagattatggaaatgcctgtg
gataaagtaagagaaataatgaaaatagctcaagaacctgtttctttagaaactccaatt
ggtgaagaggaagatagtcatttaggagactttattccagatgatgaagcaccggcgcct
gcagaagcagcagcctttacaatgttaaaagagcaacttattaatgttttagatacatta
acaccaagagaagaaaaggtattgagattaagatttggtttggatgatggaagagccaga
actttagaggaagttggaaaagaatttaatgtaacaagagaaagaataagacagatagaa
gcaaaagccctaagaaaattaagacacccaagtagaagtaaaaaattaaaagattattta
gattaa

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