Clostridium botulinum A Hall: CLC_1048
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Entry
CLC_1048 CDS
T00575
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cbh
Clostridium botulinum A Hall
Pathway
cbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLC_1048 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbh03019
]
CLC_1048 (recQ)
03400 DNA repair and recombination proteins [BR:
cbh03400
]
CLC_1048 (recQ)
Enzymes [BR:
cbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLC_1048 (recQ)
Messenger RNA biogenesis [BR:
cbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLC_1048 (recQ)
DNA repair and recombination proteins [BR:
cbh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLC_1048 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Trans_coact
Helicase_Sgs1
AAA_30
HHH
Motif
Other DBs
NCBI-ProteinID:
ABS37994
UniProt:
A5I0I7
LinkDB
All DBs
Position
1067116..1069245
Genome browser
AA seq
709 aa
AA seq
DB search
MLEDAKNLLKKHFGYNEFRKAQEKVIESILKKEDTVAIMPTGAGKSICYQIPALIFEGVT
VVISPLISLMKDQVDSLKEVGIEATYINSSLNNLEIEERIFNAREGLYKLIYIAPERLES
DSFVRSLNNLNIALVAVDEAHCVSQWGHDFRPSYTKISNFIRKLSKRPIVTAFTATATET
VRRDILNSLELQNPKVFVTGFDRENLSFSVIKGEDKEKFIFGYLESNIGKVGIIYTSTRK
EAESLYNKINKKGYKVGVYHAGLNDEERKKTQEDFSFDNIEIIVATNAFGMGIDKSNVRF
VIHHNIPKNMEAYYQEAGRAGRDGEESECILLFSPNDIRLQKYFIDESFLSPERKNNEYN
KLRAMVDYCYTSKCLRSYILEYFGEDALEEKCNNCSTCNDNREEKDITLEAQKIFSCVYR
MKERFGVNMVADVLRGSKNKKLLSLDLDGLSTYGIMEESTQKDIVALMNKLIADDYMVTT
DDKFPVVRLRQKSYDVLKGKEIVSIKVSKIEKKVKADNELFEILKQLRKTISQEESVPPF
MIFPDATLKELSEYMPTKEEDLLKIKGIGERKAKVYGERFIEAITEYMNEKGIDINNMDS
YGSAKSNKESKIKTHVLSYNLYKEGKTIKEISEERNLKAITIQEHLFKCLSEGMEVDLDN
FIKKDYEKLILDTIKKVGGTKLKPVKDELPPEVDYMCIKSVWYKYKDII
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttagaggacgctaaaaatttactaaaaaaacattttggatataatgaatttagaaaa
gctcaagaaaaggtaatagaaagtattctaaaaaaagaagatacagtagctattatgcct
acaggagcaggaaaatcaatatgttatcaaatacctgcattgatctttgaaggggtaacg
gtagtaatatctcctcttatttctcttatgaaagaccaagtagattctttaaaagaagtt
ggaatagaggctacatacataaatagttctctaaataatttagaaatagaggaaagaata
tttaatgcaagggaagggctttataagcttatttatatagctccagaaagattagaatct
gatagttttgtaagaagtttaaataatttaaatatagctttagtagcggtagatgaggca
cattgtgtatctcagtggggacatgactttagacccagttatacaaaaataagtaatttt
ataagaaaattatctaaaagacctattgtaacagcatttacagctacagccacagaaact
gttagaagggatatattaaatagtttagaacttcaaaaccctaaggtatttgtaacaggc
tttgatagagaaaatttaagcttttctgttataaagggagaagacaaagaaaaatttata
tttggttatttggaaagtaatataggtaaggtaggtataatatatacatctacaagaaaa
gaagcggaaagtttatataacaagataaacaaaaaaggttataaagtaggagtatatcat
gcagggctaaatgacgaggaaagaaagaaaacacaagaagatttttcttttgataatata
gaaataatagtagccactaatgcatttggcatgggaatagataaatctaatgtaagattt
gttatacatcataacatacctaaaaatatggaagcttactatcaagaagcaggacgtgct
ggaagggatggagaagaaagtgaatgtatattattattctctcctaatgatattcgtctt
caaaaatattttatagatgaaagctttttatcaccggaaagaaaaaataatgaatataac
aaattaagagctatggtagattattgctatacctcaaaatgtttaagatcttatatatta
gaatattttggggaagatgctttagaagaaaaatgtaataattgtagtacttgtaatgac
aatagagaagagaaggatataaccttagaagcacaaaagatattttcctgtgtttataga
atgaaggaacgttttggtgtaaacatggtagcagatgtgcttagaggatcaaaaaataaa
aagcttttatccttagatttagatggattatctacttatggcattatggaggaatctact
caaaaggatatagtagctttgatgaataaactaatagcagatgattacatggtaactaca
gatgataaatttcccgttgtaagattaaggcaaaaatcctatgatgtgttaaaagggaaa
gaaattgtatctataaaggttagcaaaatagagaaaaaagtaaaagcagataatgaatta
tttgagattttaaaacagttaagaaaaacaatatctcaagaggagtctgtaccaccattt
atgatattcccagatgctactttaaaggagcttagtgaatatatgcctacaaaagaggaa
gatttattaaaaattaaaggtataggtgaaagaaaagctaaggtttatggagaaaggttt
atagaagctattacagaatatatgaatgaaaagggaatagatattaataatatggatagt
tatggaagtgcaaaaagtaataaggagtctaaaataaagacccatgtattaagctataac
ctatacaaagaaggaaaaacaataaaagaaatttcagaggagcgaaacctaaaagctata
actatacaggagcatttatttaagtgtttgtcagaaggcatggaagttgacttagataat
tttataaaaaaagattatgagaagctcatattagatactataaaaaaagttggcggaaca
aagctaaagccagtaaaggatgaattaccaccagaagtggattatatgtgtataaaatcc
gtatggtataaatataaagatataatttaa
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