Clostridium botulinum A Hall: CLC_2678
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Entry
CLC_2678 CDS
T00575
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbh
Clostridium botulinum A Hall
Pathway
cbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLC_2678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbh03019
]
CLC_2678
03009 Ribosome biogenesis [BR:
cbh03009
]
CLC_2678
Enzymes [BR:
cbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLC_2678
Messenger RNA biogenesis [BR:
cbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLC_2678
Ribosome biogenesis [BR:
cbh03009
]
Prokaryotic type
rRNA helicases
CLC_2678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DUF4422
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABS38172
UniProt:
A5I5N8
LinkDB
All DBs
Position
complement(2816794..2818368)
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AA seq
524 aa
AA seq
DB search
MENKNFENLNLNEDVLKAIQYMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGA
PVISALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKD
IKSGVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEK
QTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRII
DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV
ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI
ERIIKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSQVS
AALMEMLFSKEMSFDYTNDKLEAEVPVRLFLSVGRKDSINVKSLLTFIQDEASVKNHEIG
DIDILDKFTFMDVSSSTAEKIINKCSGKKLNRRKVNIEIAKSKK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaaaactttgaaaatttgaacttaaatgaagatgtactaaaagctatacaa
tatatgggatttgaaactccatctgcaatacaagaaaaatcaattccagtagtattagaa
ggagcagatgttatagctcaagctcaaacaggaacaggtaaaactttagcttttggagct
cctgtaataagcgctttgtgtgacaaggaaaagaaaaaaggcgtaaaagctttagtatta
acacctacaagagaactagcccttcaaataaaagatgagctaaagagattatctaaatat
agtaaaacaaaagtacttcctgtttatggaggagagtctatagaaagacaaataaaagat
attaaaagtggagtagatatagtggttggaactccaggaagaatattagaccacattaat
agaagaactttaaagcttggaggtattgatttcctaattttagacgaagcagatgaaatg
cttaatatgggatttatagaagatatagaaactataatggaaagtacttctgaagaaaaa
caaactatgcttttttcagctactatgccagcacctattaaaaaattagctttaaactac
atgaaaaaagatgtagagcatatagctatattaaaaaaatctttaacagtagataaaata
gcacaacattattttgcagtaaaaaataaagataaactagaagctatatgtagaataata
gattcagaagaaccagaaagtgctataatattttgtagaacaaaaagaggcgttgatgaa
ttagttgaagctatgcaatcaaagggatacaatgtagaaggtatgcatggagacatgagc
caaaatcaaagaataaatactttgaaaaaatttaaaaaagctactttaaactttttagtt
gcaacagatgtagcggctagaggtatagacgtagaaaatatatctcatgttataaattat
gatatacctcaagatgcggaatcctatgttcacagaataggaagaacaggaagagctgat
aaagaaggaacagcctattctttagttacccctagagaagtatcttctattagacaaata
gaaagaataattaagagcaaaatcaccaaaaaagaattacctactttagaggatatatta
gaaaagaaatacgataatttattaaatgatataacttctaaaatagaagaaaacaaatat
gaaaaatttatgccaatggtaaaaactttagaacaaaattttgatttatctcaagtttca
gcagctttgatggaaatgttatttagtaaagaaatgagctttgattatacaaatgacaaa
ctagaggcagaagttccagtaagattatttttaagcgtaggaagaaaagatagtataaat
gtaaaaagtttattaacatttattcaagatgaagcctctgtaaaaaatcatgaaattgga
gatatagatatattagataaatttacttttatggatgtatcatcaagcactgcagaaaag
ataataaataaatgttcaggtaaaaaattaaatagaagaaaagttaatatcgaaatagct
aaaagtaaaaaataa
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