Clostridium botulinum Ba4: CLJ_B0272
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Entry
CLJ_B0272 CDS
T00895
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
cbi
Clostridium botulinum Ba4
Pathway
cbi02020
Two-component system
cbi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cbi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CLJ_B0272 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CLJ_B0272 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbi03021
]
CLJ_B0272 (rpoN)
Transcription machinery [BR:
cbi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CLJ_B0272 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_Crp_2
HTH_23
HTH_12
HTH_17
HTH_38
HTH_21
HTH_3
HTH_IclR
Sigma70_r4_2
MarR
HTH_11
Phage_CII
HTH_36
HTH_5
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ACQ52278
UniProt:
A0A3F2ZTX6
LinkDB
All DBs
Position
261828..263201
Genome browser
AA seq
457 aa
AA seq
DB search
MNMNFGLSLTQEQKLIMTQQMQLSIKLLQMSTYELQQYVEKEVQENPVLDSQNIHKEDKD
IEDINYKKLIKHLEDNGNEYGSYSSYNKEEETSPFNFISNEKSLKEYLQEQIIELNENKY
IKSICIYIIENIDDKGYLSVRDEEISEELKVPLHSIKEAIDIVQSLEPDGIGARNLKECL
KIQLKKKSINNSKICEIIDNYLPLVAENRYNVISKKLSISIKKAQEYGDVIKTLQPKPSR
GFYTGDEVKYIVPDAYIKKIDNEYYIIMNEELLPKLTVNNLYKDIVLNDTDENAVEFVKE
KLNSAIFLIKSIENRKSTIYRVLEKILEIQRDYFDLGIKFLKPMTLKEIADSLGMHESTI
SRAIRDKYINTNRGTILIKDLFTTGITANNSTGEDISVEFIKREIKELIDKEDKKKPISD
QIICNILNSKGIQISRRTVAKYREELGIQSSKCRKRF
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgaattttggattgtccttaacacaggaacaaaagttaataatgacacaacaa
atgcaactatctattaaacttcttcagatgtctacctatgagttacaacaatatgttgaa
aaggaagttcaagaaaatcctgttttagattctcagaatattcataaagaagataaggat
atagaggatataaactataaaaaattaattaaacatttagaggataatggaaatgaatat
ggtagttatagtagctacaataaagaagaagaaacctcaccttttaattttatatctaat
gaaaaatcattaaaagaatacttacaagaacaaattatagaattaaatgaaaacaaatac
ataaagtccatatgcatatacataatagaaaacatagatgataaagggtacttatctgta
agggacgaggaaatatctgaggaattaaaagtaccattacattcaataaaagaagccata
gatatagtacaatcattagaaccagatgggataggtgcgaggaatttaaaagaatgttta
aagatacaattaaaaaagaaatccataaataatagtaaaatatgtgaaattatagacaat
tatcttcctttggtagcagaaaataggtataatgttatatctaaaaaacttagtatatca
ataaaaaaggctcaggaatatggtgatgttataaaaactcttcagcctaagccttcaaga
ggattttatactggtgatgaagtaaaatatatagttccagatgcatatataaaaaaaata
gataacgaatactatataattatgaatgaagagctattgcctaagttaacagtaaataat
ttatataaagacatagttttaaatgatactgatgaaaatgcagtagaatttgtaaaagaa
aaattaaatagcgctatttttttaattaaaagtatagaaaatagaaaatctacaatttat
agagtattagaaaaaattttagaaatacaaagggattattttgatttaggaattaagttc
ttaaaacctatgacattaaaggaaatagccgatagtttaggtatgcatgagtctactata
agtagagctataagagataaatatataaacactaatagagggaccatacttataaaagat
ttatttactacaggaattactgctaataatagtacaggggaagatatttctgtagaattt
ataaaaagagaaataaaagaactaatagataaagaagataagaaaaagccaatatctgat
caaataatatgtaatatattaaatagtaagggcatacaaatatccagaagaactgtagct
aaatatagagaggaactaggaatacaatcttcaaaatgtagaaagcgtttttaa
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