Clostridium botulinum Ba4: CLJ_B0280
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Entry
CLJ_B0280 CDS
T00895
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cbi
Clostridium botulinum Ba4
Pathway
cbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLJ_B0280 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbi03019
]
CLJ_B0280 (rnr)
03016 Transfer RNA biogenesis [BR:
cbi03016
]
CLJ_B0280 (rnr)
Enzymes [BR:
cbi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CLJ_B0280 (rnr)
Messenger RNA biogenesis [BR:
cbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLJ_B0280 (rnr)
Transfer RNA biogenesis [BR:
cbi03016
]
Prokaryotic type
tRNA degradation factors
CLJ_B0280 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
CSD
OB_Dis3
S1CSD-TOTE-2
S1_RRP5
Malectin_like
WHD_MCM
Motif
Other DBs
NCBI-ProteinID:
ACQ54439
UniProt:
A0A3F2ZU51
LinkDB
All DBs
Position
271538..273715
Genome browser
AA seq
725 aa
AA seq
DB search
MNIRETILAFMEEQAYKPMNIKELKQVFGVTKHEYKDFEKMLRDMEKDGQIVKTRTEHYG
IPARMGLVLGKLQGHQKGYGFVIPEEEREDIFIPASSMNGAMHNDRVLAKITKESANGKR
CEGEIIRILERGNKTVIGVYEDSKNFGFVVSDDKKIYQDIFIPKGDKNGAKTGQVVIAEI
VTYPEKRRNPEGRIIEILGYKEDKGIDILTIIKKNKLPEEFPPKVQSYADNISEAIPEEE
YKRREDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIADVSHYVKEKNPLDKEA
LKRATSVYLIDRVIPMLPKKLSNGICSLNPKIDRLTLSCFMEIDKSGKVVDHRVVESIIK
STERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFDFEECK
IILDEKGKPIEIKPYERAIANRIIEEFMLVCNETIAEHMFWSNLPFVYRIHEDPDEEKLM
HFNEFVHNLGYVIRWNNDIHPKALQTIIEKVKGEKEETVVSTLLLRSLKQARYSPECIGH
FGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEVEYASKQSSEMERV
AQEAEREVDDLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYI
YDERRLSLIGEASKNIYRLGDTVKIKVSKVDLFSHEIYFDIIKDDEEDKEEAEFIEETEK
YNTNL
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaatataagagaaacaatattagcttttatggaagagcaggcgtataaacctatgaat
ataaaagaattaaagcaggtgtttggggtaactaaacacgaatataaagattttgagaaa
atgttaagggatatggaaaaggacggacaaatagttaaaacaagaacagaacactatggc
ataccagctagaatgggattagttttaggaaagcttcaaggacatcaaaaaggttatgga
tttgttataccagaagaggaaagggaagatatttttataccagcatctagtatgaatgga
gctatgcataatgatagagtattagctaaaatcactaaagaatcagcaaatggtaaaaga
tgtgaaggtgagataataagaatattagaaagaggtaataaaaccgttataggagtatac
gaggatagtaaaaactttgggttcgtagtttctgatgataaaaagatatatcaagacata
ttcataccaaagggagataaaaatggagcaaaaacaggtcaagtagttatagcagaaatt
gtaacatatccagaaaagagaagaaatccagaaggaagaattatagaaatattaggatat
aaagaagataaaggtatagatatattaactataattaagaaaaataaattaccagaagaa
tttccaccaaaggtacaaagttatgctgacaatatatcagaagcaattccagaggaagaa
tataaaagaagagaagatttaagagatctaactattgttactatagatggagaagatgct
aaggatttagatgacgctatatctttagagaaattacctaacggaaactattatttagga
gtacatatagcagatgtatctcactatgtaaaagagaaaaatccactagataaagaagct
ttaaaaagagcaacttcagtatatcttatagatagggtaataccaatgttacctaaaaaa
ctttctaatggaatatgtagtttgaatcctaagattgatagattaacattaagttgtttt
atggaaatagataaaagtggtaaggtagtagatcatagagtggtagaaagtataataaaa
agcactgaaagaatgacctatacagatgtgactaaaatactaagagatgaagatgaggaa
actataaataaatatagcaatttagtggattatttcaagcttatggaggaactttgcaaa
atactttacaagaaaagattaaaaagaggagctatagatttcgattttgaggaatgtaaa
ataatattagatgaaaaaggtaaacctatagagataaaaccttatgaaagagccatagca
aatagaataatagaggaatttatgcttgtttgtaatgaaactatagcagagcatatgttc
tggtctaatttaccttttgtatacagaatacacgaagatccagatgaagagaaattaatg
cattttaacgagtttgttcataacttaggatatgttataagatggaacaatgatattcat
ccaaaagcattacaaactattatagaaaaagtaaaaggggaaaaagaagaaactgtagtt
agcacattacttctacgttccttaaagcaagcaagatactctccagaatgtataggacac
tttggattagctgcaagatattactgtcactttacttcaccaataagaagatatccagac
cttatcatacacaggataataaaagaatatataaatggacagattgatgataaaagagct
acaaggcttacaacagaagtagaatatgcttctaaacaatcttcagaaatggaaagagta
gctcaagaagctgaaagagaagtagatgatctaaagaaagcagaatatatgagtgaaaga
ataggggaagaatacgaaggaataatatcctcagtaaccaactttggaatgtttgtagaa
ttaccaaatacaatagaaggattagttcatataagtacattatccgatgattactatata
tatgatgaaagaagattaagtttaattggagaagctagcaaaaatatatatagattagga
gatacagtaaaaattaaagtttcaaaagtagatttatttagtcatgaaatatattttgat
attataaaagatgatgaagaagataaagaagaggctgaatttatagaggaaacagaaaag
tataatactaatttataa
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