Clostridium botulinum Ba4: CLJ_B1040
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Entry
CLJ_B1040 CDS
T00895
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cbi
Clostridium botulinum Ba4
Pathway
cbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLJ_B1040 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbi03019
]
CLJ_B1040 (recQ)
03400 DNA repair and recombination proteins [BR:
cbi03400
]
CLJ_B1040 (recQ)
Enzymes [BR:
cbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLJ_B1040 (recQ)
Messenger RNA biogenesis [BR:
cbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLJ_B1040 (recQ)
DNA repair and recombination proteins [BR:
cbi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLJ_B1040 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Trans_coact
Helicase_Sgs1
AAA_30
HHH
Motif
Other DBs
NCBI-ProteinID:
ACQ54754
UniProt:
A0A3F3A2N6
LinkDB
All DBs
Position
1057250..1059379
Genome browser
AA seq
709 aa
AA seq
DB search
MLEGAKDLLKKHFGYNEFRKAQEKVIESIIKKEDTVAIMPTGAGKSICYQIPALIFEGVT
VVISPLISLMKDQVDSLKEVGIEATYINSSLNNLEIEERIFNAREGIYKLIYIAPERLES
DSFVRSLNNLNIALVAVDEAHCVSQWGHDFRPSYTKISNFIRKLSKRPIVTAFTATATEA
VRKDILNSLELQNPKVFVTGFDRENLSFSVIKGEDKEKFIFAYLGNNIGKVGIIYTSTRK
EAESLYNKINKKGYKVGVYHAGLNDEERKKTQEDFSFDNIEIIVATNAFGMGIDKSNVRF
VIHHNIPKNMEAYYQEAGRAGRDGEESECILLFSPNDIRLQKYFIDESFLSPERKNNEYN
KLRAMVDYCYTSKCLRSYILEYFGEDALEEKCNNCSTCNDNREEKDITLEAQKIFSCVYR
MKERFGVNMVADVLRGSKNKKLLSLDLDGVSTYGIMEEFTQKDIVALMNKLIADDYMVTT
DDKFPVVRLRPKSYDVLKGKEIVSIKVSKIEKKVKVDNELFEILKQLRKEISQEESVPPF
MIFPDATLKELSEYMPTKEEDLLKIKGIGERKAKVYGERFIEAITEYMNEKGIDINNMDN
YESTKSNKESKIKTHVLSYNLYKEGKTIKEIAEERNLKAITIQEHLFKCLSEGMEVDLDN
FIKKDYEKLILDTIKKVGGTKLKPVKDELPPEVDYMCIKSVWYKYKDII
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttagagggcgctaaagatttactaaaaaaacattttggatataatgaatttagaaaa
gctcaagaaaaagtaatagaaagtattataaaaaaagaagatacagtagctattatgcct
acaggagcaggaaaatcaatatgttatcaaatacctgcattgatttttgaaggagtaacg
gtagtaatatctcctcttatttctcttatgaaagaccaagtagactctttaaaagaagtt
ggaatagaggctacatacataaatagttctctaaataatttagaaatagaagaaagaata
tttaatgcaagggaagggatttataagcttatttatatagctccagaaagattagaatct
gatagttttgtaagaagtttaaataatttaaatatagctttggtagcggtagatgaggca
cattgtgtatctcagtggggacatgactttagaccaagttatacaaaaataagtaatttt
ataagaaaattatctaaaagacctattgtaacagcctttacagctacagccacagaagcg
gttagaaaggatatattaaatagtttagaacttcaaaaccctaaggtatttgtaacaggc
tttgatagagaaaatttaagcttttctgttataaagggagaagacaaagaaaaatttata
tttgcttatttgggaaataatataggtaaggtaggtataatatatacttctacaagaaaa
gaagcggaaagtttatataacaagataaataaaaaaggttataaagtaggagtatatcat
gcagggttaaatgatgaagaaagaaagaaaacacaagaagatttttcttttgataatata
gaaataatagtagccactaatgcctttggtatgggaatagataaatctaatgtaagattt
gttatacatcataacatacctaaaaatatggaagcttattatcaagaagcaggtcgtgcc
gggagagatggagaagaaagtgaatgtatattattattctcccctaatgatattcgtctt
caaaaatattttatagatgaaagctttttatctccggaaagaaaaaataatgaatataac
aaattaagagctatggtagattattgctacacctcaaaatgtttaagatcttatatatta
gaatattttggggaagatgctttagaagaaaaatgtaataattgtagtacttgcaatgac
aatagagaagaaaaggatataaccttagaggcacaaaagatattttcttgtgtttataga
atgaaggaacgttttggtgtaaatatggtggcagatgtacttagaggatcaaaaaataaa
aagcttttatccttagatttagatggagtatccacttatggtattatggaggaatttact
caaaaggatatagtagctttgatgaataaactaatagcagatgattacatggtaactaca
gatgataaatttcccgttgtaagattaaggccaaaatcctatgatgtgttaaaaggaaaa
gaaattgtatctataaaggttagcaaaatagagaagaaagtaaaagtagataatgaactg
tttgagattttaaaacagttaagaaaagaaatatctcaagaggaatctgtaccaccattt
atgatattcccagatgctactttaaaagaacttagcgaatacatgcctacaaaagaagaa
gatttattaaaaattaaaggtataggtgaaagaaaagctaaggtttatggagaaaggttt
atagaagctattacagaatatatgaatgaaaagggaatagatattaataatatggataat
tatgaaagtactaaaagtaataaggagtctaaaataaagacccatgtattaagctataac
ctatacaaagaaggaaaaacaataaaagaaattgcagaggagcgaaacctaaaagctata
actatacaggagcatttatttaagtgtttgtcagaaggcatggaagttgatttagataat
tttataaaaaaggattatgagaagctcatattagatactataaaaaaagttgggggaaca
aagctaaagccagtaaaggatgaattaccaccggaagtggattatatgtgtataaagtcc
gtatggtataaatataaagatataatttaa
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