KEGG   Clostridium botulinum Ba4: CLJ_B2628
Entry
CLJ_B2628         CDS       T00895                                 
Name
(GenBank) HDIG/HD/KH domain protein
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
cbi  Clostridium botulinum Ba4
Pathway
cbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLJ_B2628
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbi03019]
    CLJ_B2628
Messenger RNA biogenesis [BR:cbi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CLJ_B2628
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 HDOD KH_KhpA-B PFF1_TM DUF6007 Cas3_HD
Other DBs
NCBI-ProteinID: ACQ53704
UniProt: A0A3F3A8L8
LinkDB
Position
complement(2589323..2590864)
AA seq 513 aa
MGPMKYIIIAVVIIIICVILGLYVVDKKAKEKLSEASKEARRLKEEAERDAEAKKKEAIL
EAKEEAHKLRAEVERENRERRNEVQRLERRIIQKEEALDKKSEALENKEEALNKKQQKIE
DVETHMEELHEKQRIELERISGLTTEQAKEFLLEQVRKEVKHETAVMIKEIETKAKEEAD
KRAREVITYAIQRCAADHVAETTVHVVNLPNDEMKGRIIGREGRNIRTLETLTGVDLIID
DTPEAVILSGFDPIRREVARIALEKLIVDGRIHPARIEEMVEKAKKEVEVSIKEEGEQAT
FETGIHGLHIELIRLLGRLKYRTSYGQNVLKHSIEVSHLAGLMASELGIDPTLAKRVGLL
HDIGKAVDHEVEGPHAIIGSEIAKKYRESALVVNAIGAHHGDMEPQSLEAILVQAADAIS
AARPGARRETLEAYIKRLEKLEEIANECEGVEKSYAIQAGREIRIMVKPEVLDDTGCIEM
ARNIVKQIESELEYPGQIKVNVIRETRAIEYAK
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgggtccaatgaaatatataataatcgcagtggttattataataatttgtgtaatttta
ggcttatatgtagttgataaaaaagctaaagaaaaattatcagaggcatccaaagaagct
agaagattaaaagaagaggctgaaagagatgcagaggcaaaaaagaaagaagctatatta
gaggctaaagaagaagctcataaattaagagcagaggttgaaagagaaaatagagaaaga
cgtaatgaagttcagcgtcttgaaagaagaataattcaaaaagaagaagctttagataaa
aagagtgaggcccttgaaaacaaagaagaagctttaaacaaaaagcagcaaaaaatagaa
gatgtggaaacacatatggaggagcttcacgaaaagcaaagaatagaattagagagaatt
tcaggacttacaacagaacaggctaaagaatttttattagaacaggttagaaaagaagta
aaacatgaaactgcagtaatgataaaagaaatagaaactaaagctaaggaagaagcagac
aaaagagcaagagaagtcattacatatgccatccaaagatgtgctgcagatcatgtagca
gaaactacagtacatgtagttaatcttcctaacgatgaaatgaaaggaagaataattgga
agagaaggaagaaatataagaacattagaaacgcttacaggggttgatctaataatagat
gatacaccagaagcagttatattatctggttttgatccaattagaagagaagttgcaaga
attgcattagaaaaattaatagttgatggaagaatccatccagctagaattgaagaaatg
gttgaaaaagctaagaaagaagttgaagttagtattaaagaagaaggagaacaggctacc
tttgaaacaggtattcatggtcttcatattgaattgattagattattaggtagattaaag
tacagaacaagttatggtcaaaatgtattaaagcattctatagaagtttcacatttagca
ggtcttatggcctccgaacttggaatagacccaactttagcaaaaagagtaggtttatta
catgatataggtaaggcagtagaccatgaagttgagggaccacacgcaattataggatct
gagatagctaaaaaataccgtgaatccgcattagtagtaaatgctataggagctcatcat
ggtgatatggaaccacaatctctagaagcaatacttgttcaagcagcagatgctatatct
gcagcaagaccaggggctagaagagaaactttagaagcttatataaagagattagaaaag
ttagaagaaattgcaaatgagtgtgaaggtgtagaaaagtcatatgcaattcaagcggga
agagaaataagaattatggttaaaccagaggtgcttgatgatactggctgtattgaaatg
gctaggaatatagttaaacagatagaaagtgaacttgaatatcctggtcaaataaaggtt
aatgtcatcagagaaacccgtgccattgaatatgctaaataa

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