Clostridium botulinum Ba4: CLJ_B2628
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Entry
CLJ_B2628 CDS
T00895
Name
(GenBank) HDIG/HD/KH domain protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cbi
Clostridium botulinum Ba4
Pathway
cbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLJ_B2628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbi03019
]
CLJ_B2628
Messenger RNA biogenesis [BR:
cbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLJ_B2628
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
PFF1_TM
DUF6007
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
ACQ53704
UniProt:
A0A3F3A8L8
LinkDB
All DBs
Position
complement(2589323..2590864)
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AA seq
513 aa
AA seq
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MGPMKYIIIAVVIIIICVILGLYVVDKKAKEKLSEASKEARRLKEEAERDAEAKKKEAIL
EAKEEAHKLRAEVERENRERRNEVQRLERRIIQKEEALDKKSEALENKEEALNKKQQKIE
DVETHMEELHEKQRIELERISGLTTEQAKEFLLEQVRKEVKHETAVMIKEIETKAKEEAD
KRAREVITYAIQRCAADHVAETTVHVVNLPNDEMKGRIIGREGRNIRTLETLTGVDLIID
DTPEAVILSGFDPIRREVARIALEKLIVDGRIHPARIEEMVEKAKKEVEVSIKEEGEQAT
FETGIHGLHIELIRLLGRLKYRTSYGQNVLKHSIEVSHLAGLMASELGIDPTLAKRVGLL
HDIGKAVDHEVEGPHAIIGSEIAKKYRESALVVNAIGAHHGDMEPQSLEAILVQAADAIS
AARPGARRETLEAYIKRLEKLEEIANECEGVEKSYAIQAGREIRIMVKPEVLDDTGCIEM
ARNIVKQIESELEYPGQIKVNVIRETRAIEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaatgaaatatataataatcgcagtggttattataataatttgtgtaatttta
ggcttatatgtagttgataaaaaagctaaagaaaaattatcagaggcatccaaagaagct
agaagattaaaagaagaggctgaaagagatgcagaggcaaaaaagaaagaagctatatta
gaggctaaagaagaagctcataaattaagagcagaggttgaaagagaaaatagagaaaga
cgtaatgaagttcagcgtcttgaaagaagaataattcaaaaagaagaagctttagataaa
aagagtgaggcccttgaaaacaaagaagaagctttaaacaaaaagcagcaaaaaatagaa
gatgtggaaacacatatggaggagcttcacgaaaagcaaagaatagaattagagagaatt
tcaggacttacaacagaacaggctaaagaatttttattagaacaggttagaaaagaagta
aaacatgaaactgcagtaatgataaaagaaatagaaactaaagctaaggaagaagcagac
aaaagagcaagagaagtcattacatatgccatccaaagatgtgctgcagatcatgtagca
gaaactacagtacatgtagttaatcttcctaacgatgaaatgaaaggaagaataattgga
agagaaggaagaaatataagaacattagaaacgcttacaggggttgatctaataatagat
gatacaccagaagcagttatattatctggttttgatccaattagaagagaagttgcaaga
attgcattagaaaaattaatagttgatggaagaatccatccagctagaattgaagaaatg
gttgaaaaagctaagaaagaagttgaagttagtattaaagaagaaggagaacaggctacc
tttgaaacaggtattcatggtcttcatattgaattgattagattattaggtagattaaag
tacagaacaagttatggtcaaaatgtattaaagcattctatagaagtttcacatttagca
ggtcttatggcctccgaacttggaatagacccaactttagcaaaaagagtaggtttatta
catgatataggtaaggcagtagaccatgaagttgagggaccacacgcaattataggatct
gagatagctaaaaaataccgtgaatccgcattagtagtaaatgctataggagctcatcat
ggtgatatggaaccacaatctctagaagcaatacttgttcaagcagcagatgctatatct
gcagcaagaccaggggctagaagagaaactttagaagcttatataaagagattagaaaag
ttagaagaaattgcaaatgagtgtgaaggtgtagaaaagtcatatgcaattcaagcggga
agagaaataagaattatggttaaaccagaggtgcttgatgatactggctgtattgaaatg
gctaggaatatagttaaacagatagaaagtgaacttgaatatcctggtcaaataaaggtt
aatgtcatcagagaaacccgtgccattgaatatgctaaataa
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