Claveliimonas bilis: EUBC25_03290
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Entry
EUBC25_03290 CDS
T09374
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbil
Claveliimonas bilis
Pathway
cbil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EUBC25_03290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbil03400
]
EUBC25_03290 (mfd)
Enzymes [BR:
cbil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EUBC25_03290 (mfd)
DNA repair and recombination proteins [BR:
cbil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EUBC25_03290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
nSTAND3
DUF6037
Motif
Other DBs
NCBI-ProteinID:
BCZ26242
LinkDB
All DBs
Position
complement(331215..334553)
Genome browser
AA seq
1112 aa
AA seq
DB search
MEALTGPLHELAEFEEIWKQREKEPGMLQISGCVNSQKTHLMYALGDGCDYKVIACSSES
KAKQIYEEYRFLDGNIYLYPAKDFLFYQADIRSKELMRQRMTVIQAILEQKNITVVTSFD
GFMDVLQSREVIQGKVLEIKNGEIIDFPEIQKALAANGYDREEQVEGPGQFAVRGGILDI
YPLTEELPVRIELWDDEVDSIRTFDVESQRSIENLESVCIYPTEDMEKETAESVSFLDYF
PKKGTLIFLDEPARLLEKGKAVEEEFVEAQAKRLESGYEVSDREMQLYHTEKITEKINRR
CSIGFCSLDTKCPQFKVRAKYHIQTKGINPYNNSFEMLTRDLKRLKREGYKVVLLSGSRT
RAKRLAEDLRDYNLSSFYSDEMDRQVLPGEIMTAYGHVAEGYEYPMLKFQVISETDIFGK
VRKKKKRKSYEGRKIQSFSELKPGDYVVHENHGLGIYQGIEKIVVDKVAKDYMKISYAKG
GNLYIPATQLDLIQKYASADAKKPKLNRLGTQEWTKTKTRVRGAVREIARDLVQLYAARQ
EKEGYVYGEDTVWQKEFEEMFPFEETEDQLLAIEAVKKDMESHKIMDRLICGDVGYGKTE
IAIRAAFKAVQENKQVVYLVPTTILAQQHYNTFLQRMKEFPVRVDLMCRFRTPAQQKKTI
EDTKRGLVDIVIGTHRVLSDDLKYKDLGLLIIDEEQRFGVQHKEKIKKLKENVDVLTLTA
TPIPRTLHMSLIGIRDMSVLEEAPQERMPIQTYVMEYNEEMIREAIERECARQGQVYYVY
NRVEDIAEVTARIQRLVPEVSVAFAHGQMREHELEKIMYAFINREIDVLVSTTIIETGLD
ISNVNTMIIHDADRLGLSQLYQLRGRVGRSNRMAYAFLLYRKDKMLKEVAEKRLSAIREF
TDLGSGFRIAMRDLEIRGAGNLLGAEQHGHMEAVGYDLYCKMLNEAVKHLKGEMEEETYT
TTIDLNVDAYIPESYIPNEYQKLDVYKRIAAIENEEEMEDMLEELIDRFGDIPKKVQQLL
KIANLKAMAHQVYVTAVEQKGEQYIFTMYEKARVNPARIPAMLESYKGSLVFRAEETPCF
IYQKKGFNKKEKDEDILEVVKNVLISMQGLLE
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggaagccttgacagggcccctgcatgaactggcggaatttgaagaaatatggaaacag
agagagaaagaaccgggaatgctgcagatatcgggctgcgtcaattctcagaaaactcat
ctgatgtatgcgcttggcgatggctgtgattataaagtcatcgcttgttccagtgaatca
aaggcaaagcagatttatgaggaataccggttcctggatggaaacatatatctgtatccg
gcaaaggattttcttttttaccaggcggatatccgcagtaaggagctgatgcgccagcga
atgacagtgatacaggcaatcctggaacagaagaacattacggttgtaaccagttttgac
ggatttatggacgttctgcagtcaagagaagttatacagggaaaagtactggagattaaa
aacggcgaaatcatagattttccggagattcaaaaggctcttgcggctaatggatacgac
agggaagagcaggtggaaggccccggacagtttgcagtgagaggggggatcctggatatt
tatccgctgacagaggagcttccggtccggattgaactgtgggatgatgaagtagattct
attcggacctttgatgtggaaagtcagcgttccattgaaaatctggaatctgtctgtatt
tatccaacagaggatatggaaaaggagacagccgaaagtgtatcttttctggattatttc
ccaaaaaagggaacgttgatttttctggacgagccggccagacttttggaaaaagggaaa
gcagtagaagaggagttcgtagaagcacaggcgaaacgactggagagcgggtatgaggtc
agcgacagggagatgcagctttaccatactgaaaaaattacggaaaaaataaaccgccgc
tgcagtatcggtttctgttctcttgatacaaagtgtcctcagtttaaggtacgggctaaa
tatcatatacagacaaaagggatcaatccctacaataacagttttgaaatgctgacaaga
gatctgaagagactgaaaagggaagggtacaaagttgtgcttctttccggttccagaaca
cgggcgaaacgtcttgccgaggatctgcgtgattataacttaagcagcttttacagtgat
gaaatggatcggcaggtacttccgggggaaatcatgacagcttacggccatgtggcggaa
ggctatgaataccctatgctgaaatttcaggtcatttccgagacggatatttttggaaag
gtcagaaagaaaaagaaaagaaaatcctatgaaggacggaagatccaaagtttttcagag
cttaagccaggagattatgttgtccatgagaatcatggacttggaatttatcagggaatt
gaaaagattgtggtagataaagtagccaaggattatatgaagatttcctatgcaaaggga
ggcaatctttatattccggctacccagcttgatctgatccagaaatatgccagtgcagac
gccaagaagccgaaactgaatcgccttggtactcaggagtggaccaagacaaaaacaagg
gtccggggagcggtaagagaaattgcaagagatttggtgcagctgtatgcggcaagacag
gaaaaggaaggctatgtttacggagaagataccgtctggcaaaaagaatttgaggagatg
ttcccttttgaagagacagaagatcagcttctggctattgaggcggtaaaaaaagacatg
gaaagccataagatcatggaccgtctgatctgtggagatgtaggatacgggaaaaccgaa
atcgctattcgtgccgccttcaaagctgtacaggaaaataaacaggttgtctatctggtg
ccgacaacgattcttgcacagcagcattacaatacgtttttgcagaggatgaaagaattt
ccggtccgtgtagatctcatgtgccgtttccgaactccggctcagcagaaaaaaaccata
gaagatacgaaaagaggccttgttgacattgtgatcggtactcacagggttctgagcgac
gatttaaaatacaaggatctgggacttctgattattgatgaggaacaaagattcggcgta
caacataaggaaaagattaaaaagctgaaagaaaatgtggatgttctgactttgacggca
acgccgattccccgtactctccatatgagcctcatcggaatccgggatatgagcgttctg
gaggaagctccgcaggagagaatgcctatacagacctatgtcatggaatacaatgaagaa
atgatacgggaggccatagagagggaatgtgcccggcaggggcaggtatactatgtctac
aaccgcgtggaagatattgccgaggtgacggcaagaatacaaaggcttgtgccggaagtt
tccgttgcttttgctcacgggcagatgagggaacatgaactggaaaagatcatgtatgct
tttattaaccgggagattgatgttcttgtctctacaacaattattgaaacgggacttgac
atttccaatgtcaatacgatgatcatccatgatgctgacaggctgggactttcccagctg
taccagcttcgcggcagagtcgggcgttccaatcggatggcttatgctttcctcctttac
cggaaagacaaaatgctcaaagaagtggccgagaagcgattgtccgctatccgggagttt
acggaccttggatccggattccggattgccatgcgggatttggaaatccggggtgccgga
aatcttctgggagcagaacagcacggtcacatggaagcggtaggatatgatctctattgt
aaaatgttgaatgaagcagtgaaacatttgaaaggagagatggaggaagagacttacaca
acgacgatagatctcaatgtggatgcctatattccggaatcctacattcccaatgaatat
cagaagctggatgtttataagaggattgctgctattgagaatgaagaagagatggaagac
atgttggaagaactgatcgaccggtttggagatataccaaaaaaggtgcagcagcttctt
aagatcgcaaatctgaaagcgatggctcaccaggtttacgttacagcagtagaacaaaag
ggagagcagtatatttttacgatgtacgagaaggccagggtaaacccggccaggattccg
gctatgctggaaagctataagggaagtctcgttttccgggcggaagaaacaccgtgtttt
atttatcagaaaaagggctttaataagaaggagaaagacgaagatattctggaagtagtg
aaaaatgtgttaatttccatgcaaggattgcttgaatag
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