Clostridium botulinum H04402 065: H04402_02430
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Entry
H04402_02430 CDS
T02076
Name
(GenBank) Hydrolase (HAD superfamily)
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cbj
Clostridium botulinum H04402 065
Pathway
cbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H04402_02430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbj03019
]
H04402_02430
Messenger RNA biogenesis [BR:
cbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H04402_02430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Cas3_HD
PFF1_TM
DUF6007
COP9_hel_rpt
Motif
Other DBs
NCBI-ProteinID:
CBZ04238
LinkDB
All DBs
Position
complement(2544686..2546227)
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AA seq
513 aa
AA seq
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MGPTKYIIIAVVIIIICVILGLYVVDKKAKEKLSEASKEARRLKEEAERDAEAKKKEAIL
EAKEEAHKLRAEVERENRERRNEVQRLERRIIQKEEALDKKSEALENKEEALNKKQQKIE
DVETHMEELHEKQRTELERISGLTTEQAKEFLLEQVRKEVKHETAVMIKEIETKAKEEAD
KRAREVITYAIQRCAADHVAETTVHVVNLPNDEMKGRIIGREGRNIRTLETLTGVDLIID
DTPEAVILSGFDPIRREVARIALEKLIVDGRIHPARIEEMVEKAKKEVEVSIKEEGEQAT
FETGIHGLHIELIRLLGRLKYRTSYGQNVLKHSIEVSHLAGLMASELGIDPTLAKRVGLL
HDIGKAVDHEVEGPHAIIGSEIAKKYRESALVVNAIGAHHGDMEPQSLEAILVQAADAIS
AARPGARRETLEAYIKRLEKLEEIANECEGVEKSYAIQAGREIRIMVKPEVLDDTGCIEM
ARNIVKQIESELEYPGQIKVNVIRETRAIEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaacgaaatatataataatcgcagtggttattataataatttgtgtaatttta
ggcttatatgtagttgataaaaaagctaaagaaaaattatcagaggcatccaaagaagct
agaagattaaaagaagaggctgaaagagatgcagaggcaaaaaagaaagaagctatatta
gaggctaaagaagaagctcataaattaagagcagaggttgaaagagaaaatagagaaaga
cgtaatgaagttcagcgtcttgaaagaagaataattcaaaaagaagaagctttagataaa
aagagtgaggcccttgaaaacaaagaagaagctttaaacaaaaagcagcaaaaaatagaa
gatgtggaaacacatatggaggagcttcacgaaaagcaaagaacagaattagagagaatt
tcaggacttacaacagaacaggctaaagaatttttattagaacaggttagaaaagaagta
aaacatgaaactgcagtaatgataaaagaaatagaaactaaagctaaggaagaagcagac
aaaagagcaagagaagtcattacatatgccatccaaagatgtgctgcagatcatgtagca
gaaactacagtacatgtagttaatcttcctaacgatgaaatgaaaggaagaataattgga
agagaaggaagaaatataagaacattagaaacgcttacaggggttgatctaataatagat
gatacaccagaagcagttatattatctggtttcgatccaattagaagagaagttgcaaga
attgcattagaaaaattaatagttgatggaagaatccatccagctagaattgaagaaatg
gttgagaaagctaagaaagaagttgaagttagtattaaagaagaaggagaacaggctacc
tttgaaacaggtattcatggtcttcatattgaattgattagattattaggtagattaaag
tacagaacaagttatggtcaaaatgtattaaagcattctatagaagtttcacatttagca
ggtcttatggcctccgaacttggaatagacccaactttagcaaaaagagtaggtttatta
catgatataggtaaggcagtagaccatgaagttgaggggccacacgcaattataggatct
gagatagctaaaaaataccgtgaatccgcattagtagtaaatgctataggagctcatcat
ggtgatatggaaccacaatctctagaagcaatacttgttcaagcggcagatgctatatct
gcagcaagaccaggagctagaagagaaactttagaagcttatataaagagattagaaaag
ttagaagaaattgcaaatgagtgtgaaggtgtagaaaagtcatatgcaattcaagcggga
agagaaataagaattatggttaaaccagaggtgcttgatgatactggctgtattgaaatg
gctaggaatatagttaaacagatagaaagtgaacttgaatatcctggtcaaataaaggtt
aatgtcatcagagaaacccgtgccattgaatatgctaaataa
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