Clostridium botulinum H04402 065: H04402_02659
Help
Entry
H04402_02659 CDS
T02076
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cbj
Clostridium botulinum H04402 065
Pathway
cbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H04402_02659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbj03019
]
H04402_02659
Messenger RNA biogenesis [BR:
cbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H04402_02659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
CBZ04466
LinkDB
All DBs
Position
complement(2754046..2755755)
Genome browser
AA seq
569 aa
AA seq
DB search
MRVDKEKDKAKDRVKDKEKDKIKIIPLGGLNEIGKNLTAIEYKNDIVVIDCGLKFPDDDM
LGIDVVIPDITYLKKNINKVKGIFLTHGHEDHIGALPYVLRAVNVPVYGTKLTLGIVETK
LKEHGLLSSVELKCIKPREIIRLQNVSVEFIRTSHSIADTVAIAIHTPLGVVLHTGDFKI
DYTPIDGHVTDLARFAEIGKRGVIAMMADSTNVERPGYTMSESTVGEAFLNIFSGVKGRI
IVATFASHIHRIQQIIRAAEKFKRKVAVSGRSMENIMEVAMKLGYIKAEKNIFISIDAIN
KYPDDQVVIITTGSQGEPMSALSRMAASEHKKVNIKPGDKVIISATPIPGNEKLVSRVIN
QLFKKGADVIYETLADIHVSGHACQEELKLMHTLVRPKYFIPVHGEYRHLKQHGELACQL
GLPENHVMVSDIGDVIEVSRECIRKNGSVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGI
LTVVVTIEKVSGSVIAGPDIISRGFVYVRESEDLMEEAKDLVKKALEECERNHITEWAAI
KTNIKDVLRGFLYEKTKRKPMILPIIMEI
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
ttgcgagtggacaaagaaaaagataaagcaaaagatagagtaaaagataaggagaaggat
aaaataaagattattcctttaggcggcttaaatgaaattggcaaaaatttaactgctata
gaatacaaaaatgatatagtagttatagattgtggccttaaatttccagacgacgatatg
ttaggaatagatgtagttattcctgacataacttatcttaaaaagaatattaataaagta
aaaggtatatttttaactcatggtcatgaagatcacataggagcattaccctatgttctg
agagcagtaaatgtaccagtatacggaactaagcttacattaggtatagtagaaaccaag
ttaaaagaacatggactactaagttctgtggagttaaaatgcataaagccaagggaaata
attagacttcaaaatgtttctgtggaatttataagaactagccacagtatagcagacaca
gtagctatagctatacatacacctttaggggttgttcttcatacaggagactttaaaata
gactacactcctatagatggtcatgttacagatttagctagatttgctgaaataggtaag
cgtggagttattgctatgatggcagatagtacaaatgtagaaagaccaggctataccatg
tcagaaagtactgtaggggaagcttttctaaatatattctcaggagttaagggaagaata
attgttgctacttttgcatctcatatccatagaatccaacaaataataagggctgctgaa
aaatttaaaagaaaagtagcggtttctggtagaagtatggaaaatattatggaagtagct
atgaagcttggatatataaaagcagaaaaaaatatatttataagcatagatgctataaat
aaatatccagatgaccaagtagttataataactacaggaagtcaaggagagcctatgtca
gctctttctaggatggcagcttcagagcataaaaaagtaaatataaagcccggtgataag
gtaattatatctgcaacacctatcccaggtaatgaaaaattagtatctagggtgataaat
cagttatttaaaaagggtgcagatgttatatatgaaacacttgcagatatccatgtatct
ggtcatgcatgccaggaagaacttaaacttatgcatacattagtaagacctaaatatttt
atacctgttcatggagaatatagacacttaaaacaacatggagaacttgcctgtcaatta
ggattgccagagaatcatgttatggtttcagatataggtgatgttatagaagtaagtaga
gaatgcattagaaaaaatggctctgtagtgtcaggtcaagtctttgtagatggactaggt
gtaggagatgtagggaatatagtattaagagatagaaagcacttatctcaagatggtata
ttaacagtagttgttactatagaaaaggtttcaggctctgttattgcaggtcctgatata
atatcaagaggttttgtttatgtaagagaatcagaggatttaatggaagaagctaaagat
ttagtaaaaaaagctctagaagaatgtgaaagaaatcatattacagaatgggctgcaatt
aaaacaaatataaaagatgttttaagaggattcttatatgaaaaaacaaaaagaaaacct
atgatattaccaattataatggaaatatag
DBGET
integrated database retrieval system
