| Entry |
|
|---|
| Symbol |
rpoC
|
|---|
| Name |
(GenBank) DNA-directed RNA polymerase, beta' subunit
|
|---|
| KO |
|
|---|
| Organism |
cbk Clostridium botulinum B Eklund 17B (NRP)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:cbk00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLL_A0232 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cbk03021]
CLL_A0232 (rpoC)
03400 DNA repair and recombination proteins [BR:cbk03400]
CLL_A0232 (rpoC)
Enzymes [BR:cbk01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLL_A0232 (rpoC)
Transcription machinery [BR:cbk03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLL_A0232 (rpoC)
DNA repair and recombination proteins [BR:cbk03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLL_A0232 (rpoC)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
240696..244229
|
|---|
| AA seq |
1177 aa
MFELNNFDAIQIGLASPEQIREWSRGEVKKPETINYRTLKPEKDGLFCERIFGPMKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLMDM
SPRALEKVLYFASYIVIDPKETPLLKKQLLNEKEYREAIDKYGEDSFVAGMGAEAIQDLL
GQIDLIAGSKELKEDLKQSTGQKRVRIIRRLEVVESFAKSGNNPKWMIINVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVQDGIAHNIKSAKRMVERVLPQVWDVLEEVITDHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAGNI
LKPSDGKPVCVPTQDMVLGSYYLTMDRTGAKGEGMTFSNKDEAVMAYESKYIDIHAQINV
RVYKEIDGVLKSGIIKTTVGKLIFNESIPQDLGFVNREDEKEKFNLEIDFLVTKKSLGKV
IDQSYMLHGPTKTSIMLDNIKALGYHYSSIGAVTVAASDMIVPPVKYDLLHEADETIDKI
EKMYKRGFISEDERYERVIEKWTKTTEEVADALMDSLDKFNPIYMMADSGARGSKSQIKQ
LAGMRGLMASPSGKILELPIRASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVCQDVIVREEDCGTDNGIYVSEIKEGSEVIEELRERLIGRYTAEDVVDPNSGEIIVA
RNEYMNPIIADKVVSAGIKKVKIRSAFTCNCKIGVCAKCYGMNMATAKKIDIGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEIHGNVRIEET
KKKRAVFVMGADGDERSYDIPFGSRLKVSDGDYIEAGDEITEGSVNPHDIMNIKGVDGAR
RYLLSEVQKVYRLQGVDINDKHLEVVVKQMTRKVKILESGDTELLPGIMIDIFDFQEAND
KVREFGGEEAKGEQSLLGITKAALATDSFLSAASFQETTRVLTEAAIKGKVDPLIGLKEN
VIIGKLIPAGTGMMKYKGLNLNTKNEKIEENETEIVE |
|---|
| NT seq |
3534 nt +upstreamnt +downstreamnt
ttgtttgagttaaataattttgatgccatacaaattggtttagcatctccagaacaaata
agagagtggtcaagaggagaagtaaaaaaacctgaaactattaattacagaacattaaag
ccagaaaaagatggtcttttctgtgaaagaatatttggacctatgaaagactgggaatgt
cattgtggaaagtataagagagtaagatataaaggtatagtttgtgacagatgtggagtt
gaagttacaaaagctaaagtaagaagagaaagaatggggcacattgaactggctgctcca
gtttctcacatttggtattttaagggaattccatcaagaatgggattattaatggatatg
tcaccaagagctttagaaaaagttttatattttgcatcttatatagtaatagatccaaaa
gaaacaccattattaaagaaacaattgcttaatgaaaaagaatatagagaagcaatagat
aaatatggtgaggatagctttgttgctggaatgggtgctgaagcgattcaagacctgctt
ggacaaatagacttaattgcaggttctaaagaacttaaagaagacttaaaacaaagcaca
ggtcaaaaaagagtaagaattataagacgattagaagttgtagaatcttttgctaagtca
ggaaataatccgaaatggatgattataaatgtaattcctgtaattccaccagatttaaga
cctatggttcaattagatggaggaagatttgcaacatctgatttaaatgacttatataga
agagttattaatagaaacaatagattgaaaaaattattagatttaggagcaccagatatc
atcgtaagaaatgaaaaaagaatgcttcaagaagcagtagatgctcttattgataatggt
agaagaggtagaccggtaacaggtccaggaaatagacctttaaaatctctttcagatatg
ttaaagggtaagcaaggtagatttagacaaaacttacttggtaagagagttgactattct
ggtagatcagttatcgttgttggaccagaattgaaaatgtatcaatgtggacttccaaaa
gaaatggctttagagttatttaaaccatttgttatgaaaaaattagttcaagatggaatt
gcgcataatataaagagtgctaagagaatggtagaaagagttttaccacaagtatgggat
gtgttagaagaagttattactgatcatccagtattacttaaccgtgctcctacgctacat
agattaggaattcaagcattccaacctgtattagtagaaggaagagcaattaaattacat
ccattagcatgtacagcgtacaatgccgactttgatggagaccaaatggctgtccatgta
ccgctatcagtagaagctcaagcggaagcaagattcttaatgttagcagcaggaaatatt
ttaaaaccatctgatggtaaaccagtttgtgtaccaacacaagatatggttcttggttct
tattacttaacaatggatagaactggtgctaaaggagaaggtatgactttctctaataaa
gatgaggcagttatggcttatgaatctaaatatatagatattcatgcgcaaatcaatgtt
agagtatacaaggaaatagatggagtattaaaatcaggaataataaaaactacagtagga
aaacttatctttaatgaatcaattcctcaagatttagggtttgttaatagagaagatgaa
aaagaaaagtttaatttagaaatagatttcctagtaactaagaagtcattaggaaaagta
atagatcaaagttatatgctacatggtcctacaaaaacatcaataatgcttgataatatt
aaagcattaggatatcattattcatcaattggtgcggtaacagttgcagcatcagatatg
atagtacctccagttaagtacgatttattacatgaagcagatgaaacaatagataaaatc
gaaaagatgtataaaagaggatttatatctgaagatgaaagatatgaaagagttatagaa
aagtggactaagacaacagaagaagttgcggatgcattaatggatagtttggataaattt
aatccaatctacatgatggcagattcaggagccagaggatctaaatctcaaattaagcaa
ttagctggtatgagaggacttatggcaagtccatcaggaaaaatacttgaattacctatc
agagcatcatttagagaaggtcttgatgtattagaatactttatatccactcatggagct
agaaaaggtaatgcggatacagcgttaaaaacagccgattcaggttatttaacaagaaga
cttgttgatgtttgtcaagatgtaattgtaagagaagaagattgtggaacagataatgga
atatatgtatctgaaataaaagaaggttctgaagtaatcgaagaattaagagaaagatta
attggtagatatactgcagaagatgttgttgatcctaatagtggagaaataatagtagca
agaaatgagtatatgaatccaataatagcggataaagttgtttctgctggaatcaaaaaa
gttaagattagatctgcatttacttgtaattgtaaaataggtgtatgtgctaagtgttat
ggaatgaacatggcaacagctaaaaaaattgatataggagaagctgttggtataatagca
gctcaatcaataggagaacctggaacgcagcttacaatgagaacattccatacaggtgga
gttgcaggatcagatatcactcaaggtttacctagagttgaagaattgtttgaagctaga
aagccaaaggggcttgctatagtaagtgaaatacatggtaatgtaagaattgaagaaact
aagaaaaagagagctgtatttgttatgggtgcagacggagacgaacgtagctatgatatt
ccatttggatcaagattgaaagtatctgatggagactatattgaagctggagatgaaata
acagaaggatcagtaaatcctcatgatattatgaacattaaaggtgtagatggagctaga
agatatttactttcagaagttcaaaaagtatatagattacaaggtgttgatatcaatgat
aagcatcttgaagtagttgtaaaacaaatgactagaaaagtaaaaattcttgaatcaggt
gatactgagttattaccaggaataatgatagatatttttgatttccaagaagcaaatgat
aaagttagagaatttggtggagaagaagctaaaggcgaacaatctttattaggtataact
aaagcagcgttagctacagatagtttcttatcagcagcttcattccaagaaactactaga
gttcttacagaagcagctataaaaggaaaagttgatccattaataggattaaaagaaaat
gtaatcatcggtaaattaataccagctggaacaggcatgatgaaatacaaaggtttaaat
ttaaatacaaaaaatgaaaaaatagaagaaaatgagacagaaatagttgaataa |
|---|
