Clostridium botulinum B Eklund 17B (NRP): CLL_A3470
Help
Entry
CLL_A3470 CDS
T00696
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbk
Clostridium botulinum B Eklund 17B (NRP)
Pathway
cbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLL_A3470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbk03019
]
CLL_A3470
03009 Ribosome biogenesis [BR:
cbk03009
]
CLL_A3470
Enzymes [BR:
cbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLL_A3470
Messenger RNA biogenesis [BR:
cbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLL_A3470
Ribosome biogenesis [BR:
cbk03009
]
Prokaryotic type
rRNA helicases
CLL_A3470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACD23314
UniProt:
B2TR76
LinkDB
All DBs
Position
3668626..3670206
Genome browser
AA seq
526 aa
AA seq
DB search
MNDNKFYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGC
PILSRLNDTNGIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRR
DNIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIEDIETIISNTPAERQT
LLFSATMPAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDL
DNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIAT
DVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQR
VTKSTITEKSVPTANEIHSRKFTNIMNEIKETIDSGDFSTFVPSAIELNEAYDPISIIAS
LMKIKFENESSFEYNTDTLDAPSASKNDVRLFFSVGKKDGLTPKILINYIKDQTRVRASA
IGKIDLMDNFSFVTIDEDVSSKVLEKCIGGKINKKKVNVEVANKRK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataacaaattttattctttaggtcttaaagacacagttgtgaaagcaatagat
gatttaggatttaataccccttctcaaatacaagaagaaagtatacctgtaacactagaa
ggttttgacttaattggtcaagcacaaactggtacaggaaaaactgcagcgtatggttgt
cctatacttagcagattaaatgacacgaacggaattaaagcacttattttagctcctaca
agagagcttgctgtacaagtaaatgatgagcttaagaagctttcaaaatatgaaaaagca
aatgtattacctgtttatggtggagaatctatcgatagacaaatcagagctttaagaaga
gataacattgatattgttgttggaactccaggtagagtgttagaccttataaacagaaag
atacttaaattaaatacagtagatttcttagtattagatgaagcagacgaaatgcttaac
atgggattcatcgaagacattgaaactataataagtaatactccagctgaaagacaaact
ttattattctcagctacaatgcctgctccaatagcaaaattagctaagaattacatgaaa
gcagatgctaaacatgtagcaataaagagaagttcacttacagtatctaaaatagaacaa
aactattttatgattaacaacaaacatagacttgaagcactttgtagattattagattta
gataatccatcttctgctatcatattctgtagaactaaaaaaggcgttgacgaattagtt
gaagagcttcaaggtaaaggatatgtagttgagggtatgcacggagatatgtctcaagta
cacagattaactactttaaagaaatttaaagaaggttcattgaacttacttatcgcaact
gacgtagctgctagaggtattgatgttgacggtattacacatgtaataaactatgattta
ccacaagatgtagaatcatatgttcatagaatcggaagaactggtagagcaaatagaact
ggtactgcatattctttagtatctccaaaagaattaggtatgcttaaacaaattcaaaga
gtaactaagagtacaataacagaaaaatcagttccaacagctaatgaaatacatagtaga
aaatttactaatataatgaatgaaattaaagaaactattgatagtggtgattttagcaca
tttgttccaagtgccattgaattaaatgaagcttatgatccaatttctataatagcatct
ttaatgaagataaaattcgaaaatgaaagcagctttgaatataatacagatacattagat
gcacctagtgcttcaaaaaatgatgtacgtttattcttctctgttggaaaaaaagatggc
ttaactccaaagatcttaataaactatataaaagatcaaactagagtaagagcttctgct
attggtaaaatagatcttatggataatttctcttttgtaactatagatgaagatgtttct
tctaaagtgttagagaaatgtatcggcggtaaaataaacaaaaagaaagttaatgttgaa
gtagctaataaaagaaaataa
DBGET
integrated database retrieval system
