KEGG   Clostridium botulinum A3 Loch Maree: CLK_2189
Entry
CLK_2189          CDS       T00670                                 
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
cbl  Clostridium botulinum A3 Loch Maree
Pathway
cbl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLK_2189
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbl03019]
    CLK_2189
   03009 Ribosome biogenesis [BR:cbl03009]
    CLK_2189
Enzymes [BR:cbl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CLK_2189
Messenger RNA biogenesis [BR:cbl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CLK_2189
Ribosome biogenesis [BR:cbl03009]
 Prokaryotic type
  rRNA helicases
   CLK_2189
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII Flavi_DEAD AAA_22 SBF_like
Other DBs
NCBI-ProteinID: ACA55970
LinkDB
Position
complement(3028005..3029579)
AA seq 524 aa
MENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGA
PVISSLCDNEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKD
IKSGVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTPEEK
QTMLFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRII
DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV
ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI
ERITKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSQVS
AALMEMLFSKEMSFDYTNNKLEAEVPVRLFLSVGRKDSINVKSLLTFIQDEASVRNHEIG
DIDILDKFTFMDVSSGTAEKIINKCSGKKLNRRKVNIEIAKSKK
NT seq 1575 nt   +upstreamnt  +downstreamnt
atggaaaataaaaactttgaaaatttgaacttaaatgaagatgtactaaaagctatacaa
catatgggatttgaaactccatctgcaatacaagaaaaatcaattccagtagtattagaa
ggagcagatgttatagcccaagctcaaacaggaacaggtaaaactttagcttttggagct
cccgtaataagctctttgtgtgacaatgaaaagaaaaaaggcgtaaaagctttagtatta
acacctacaagagaactagcccttcaaataaaagatgagctaaagagattatctaaatat
agtaaaacaaaagtacttcctgtttatggaggagagtctatagaaagacaaataaaagat
attaaaagtggagtagatatagtagttggaactccaggaagaatattagaccacattaat
agaagaactttaaagcttggaggcattgatttcctaattttagacgaagcagatgaaatg
cttaatatgggatttatagaagatatagaaactataatggaaagtactcctgaagaaaaa
caaactatgcttttttcagctactatgccagcagctattaaaaaattagctttaaactac
atgaaagaagatgtagagcatatagctattttaaaaaaatctttaacagtagataaaata
gcacaacattattttgcagtaaaaaataaagataaactagaagctatatgtagaataata
gattcagaagaaccagaaagtgctataatattttgtagaacaaaaagaggcgttgatgaa
ttagttgaagctatgcaatcaaagggatacaatgtagaaggtatgcatggagacatgagc
caaaatcaaagaataaatactttgaaaaaatttaaaaaagctactttaaactttttagtt
gcaacagatgtagcggctagaggtatagacgtagaaaatatatctcatgttataaattat
gatatacctcaagatgcggaatcctatgttcacagaataggaagaacaggaagagctgat
aaagaaggaacagcctattctttagttacccctagagaagtatcttctattagacaaata
gaaagaataactaagagtaaaatcactaaaaaagaattacctactttagaggatatatta
gaaaagaaatatgataatttattaaatgatataacttctaaaatagaagaaaataaatat
gaaaagtttatgccaatggtaaaaactttagaacaaaattttgatttatctcaagtttca
gcagctttgatggaaatgttatttagtaaagaaatgagctttgattatacaaataacaaa
ctagaggcagaagttccagtaagattatttttaagcgtaggaagaaaagatagtataaat
gtaaaaagtctattaacatttattcaagatgaagcttctgtaagaaatcatgaaattgga
gatatagatatattagataaatttacttttatggatgtatcatcaggcactgcagaaaag
ataataaataaatgctcaggtaaaaaattaaatagaagaaaagttaatatcgaaatagct
aaaagtaaaaaataa

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