KEGG   Clostridium botulinum A3 Loch Maree: CLK_2322
Entry
CLK_2322          CDS       T00670                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
  KO
K03086  RNA polymerase primary sigma factor
Organism
cbl  Clostridium botulinum A3 Loch Maree
Pathway
cbl02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cbl00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    CLK_2322 (rpoD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbl03021]
    CLK_2322 (rpoD)
Transcription machinery [BR:cbl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CLK_2322 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 Sigma70_r1_1 HTH_PafC Exonuc_VII_L
Other DBs
NCBI-ProteinID: ACA57054
LinkDB
Position
complement(3192370..3193455)
AA seq 361 aa
MKEKKNNAKDKNEKMKLVRRLIDKGKKSGSLSYKEIMDELEEIDLSPEQIEKIYDVLESM
GVEVTGDMNDIDVKEEDIDLSVPEGIAIDDPVRMYLKEIGKVALLTSEEEIELAQRIEAG
DMVAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA
TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEVAKIMEMPV
DKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTL
TPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL
D
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgaaagaaaagaagaataatgctaaagataaaaatgaaaaaatgaagttagttagacgt
ttaatagataaaggtaaaaaaagtggatcattaagttataaagaaattatggatgaatta
gaagaaatagatttaagtccagaacaaatcgaaaaaatatacgatgtattagagtctatg
ggtgtggaagttacaggtgatatgaatgatatagacgtaaaggaagaggatattgattta
tcagttccggaaggtattgctatagatgatcctgttagaatgtatttaaaagaaataggg
aaagtagcattattaacttcagaagaagaaatagaattagcacaaagaatagaagcagga
gatatggttgctaagaagaaattagcagaggctaatttaagacttgttgtaagtattgca
aagagatatgtaggaagaggaatgttatttttagatcttatacaagaaggtaacctagga
ttaataaaagctgtagaaaaatttgactatagaaaaggttacaaatttagtacttatgct
acttggtggataaggcaggccattacaagggctatagcagatcaagcaagaaccataaga
ataccagttcacatggtagaaaccataaataaacttataagggtatcaaggcaactatta
caagaactaggtagggagccacagccagaagaagtggctaagattatggaaatgcctgtg
gataaagtaagagaaataatgaaaatagctcaagaacctgtttctttagaaactccaatt
ggtgaagaggaagatagtcatttaggagactttattccagatgatgaagcaccagcgccg
gcagaagcagcagccttcacaatgctaaaagagcaacttattaatgttttagatacatta
acaccaagagaagaaaaggtattgagattaagatttggtttggatgatggaagagccaga
actttagaggaagttggaaaagaatttaatgtaacaagagaaagaataagacagatagaa
gcaaaagccctaagaaaattaagacacccaagtagaagcaaaaaattaaaagattattta
gattaa

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