Clostridium botulinum A3 Loch Maree: CLK_2806
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Entry
CLK_2806 CDS
T00670
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cbl
Clostridium botulinum A3 Loch Maree
Pathway
cbl03030
DNA replication
cbl03430
Mismatch repair
cbl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLK_2806 (dnaE)
03430 Mismatch repair
CLK_2806 (dnaE)
03440 Homologous recombination
CLK_2806 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbl03032
]
CLK_2806 (dnaE)
03400 DNA repair and recombination proteins [BR:
cbl03400
]
CLK_2806 (dnaE)
Enzymes [BR:
cbl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLK_2806 (dnaE)
DNA replication proteins [BR:
cbl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLK_2806 (dnaE)
DNA repair and recombination proteins [BR:
cbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLK_2806 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF6282
tRNA_anti_2
DNA_pol_IIIA_C
GeBP-like_DBD
MotCF
Motif
Other DBs
NCBI-ProteinID:
ACA54090
UniProt:
B1L267
LinkDB
All DBs
Position
complement(3699227..3702784)
Genome browser
AA seq
1185 aa
AA seq
DB search
MGKNQFDEKKPEWISLHQHTEYSLLDSSAKIADLIKKAKEFGMKSIAITDHGVMYGCVDF
YKEAIKQGIKPIIGCEIYVASKSMYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSKASV
EGFYYKPRVDHEFLKDHSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFEEGFY
LELQYHGMEEQLKVNEALVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEE
ENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGV
DPYEYLREICFKGLFLRYEVLKDFIDNPFSIDEVLVYGDENKEAFDLIERLNYELSIIKQ
MGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNP
DRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYPYA
EVDRIAKMIPSVLNITIDKALELNPELKETYDDEERVKELIDVARALEGLPRHTSTHAAG
VVIASQPLVNYVPLQKNEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRIIRENK
GIDIDLDNIDFEDKEVYKMIGQGQTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRP
GPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSMGRSDL
VRRAMSKKKHDVMEQERRNFIYGNGDEGVKGCINNGIDENVANNLFDSMMDFASYAFNKS
HAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIVAPNINES
YSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGNFTDLSDFFNKVDTSIINKRLVE
SLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSMDIKYP
NINEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTNHHISDIISKESLEGNLVDTVS
SIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFPKIFNMARSIINEDE
VVLLKGRVSLREDEQPKLICEFMEPLIKINSEKLYILVEEKKDIKLKLQEMKGVFLQHKG
NIPVYFCTNKERKKFRIDRELWVNGDRELVDDLRNMFGENNVKIL
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaatcaatttgatgagaagaaaccagagtggataagtttacatcaacataca
gagtattcattattagactcttcggcaaaaatagcagatcttataaagaaagcaaaagag
tttggtatgaaaagtattgctattacagatcatggagttatgtatggatgtgtagatttt
tataaagaagcgataaaacaaggaataaagcctataataggctgtgaaatatatgtagca
tcaaaatctatgtacataaaacagcaagacaaagaaaatgaaactcatcatttagtattg
ttagtaaagaatgaaatagggtacaaaaacttaatggaaatagtatcaaaggcatctgta
gagggattctattataagcctagagtggatcatgaatttttaaaagatcatagtgaagga
ttaatagcattaagtgcatgtttaggaggagaagttcaagctaacatattaaaagaaaat
ttaaaaaaagctgaagaagtggcattaatttataaagatatctttgaagaaggattttat
ttagaacttcaatatcatggtatggaagagcaattaaaggttaatgaagcattagttaag
atgtctaaggatttagatatacctttagtggctacaaatgatgtccattatataagaaaa
gaagattataaatcccatgatatattgttatgcatacaaacaggtaaaactgtagaggaa
gaaaatagaatgagatatccatctgatcagttttatttaaaatcaccagaggaaatgtat
gaaactttttcttatgtaccagaggctttagaaaatacggttaagatatcagaagaatgt
aattttgattataattttcatgaatcaaaattacccaagtttccactagaagaaggggta
gatccctatgaatatttaagggaaatatgctttaaaggactatttttaagatatgaagta
cttaaagattttatagataacccctttagtattgatgaagttttagtctatggggatgaa
aataaagaagcttttgatttaatagagagattaaattatgagctatctataataaaacaa
atgggatatgtagattattttttaatagtatgggattttataagatttgctaatgaaaag
ggaataatgacaggaccaggaagaggatctgcagcaggatctttagtagcctatacttta
ggaataactaaaattgaccctattaaatataatctaatatttgaaaggtttctaaatcca
gatcgtatttctatgcctgatatagatagtgatttttgttatgaaagacgaggagaagtt
atagattatgtggtagaaaaatatggcaaggccaatgtatcgcaaataataacttttgga
actatggctgcaagagcttgtataagagatgtaggaagagctatgaattatccttatgca
gaagtagatagaatagctaaaatgatacctagcgttttaaatataactatagacaaagct
ttagagttgaacccagaattaaaagagacttatgatgatgaagaaagagttaaagagtta
atagatgtggcaagggctttggaagggcttccaagacatacatctactcatgccgcagga
gtagttatagcatcacaacctttagtaaattatgtacctcttcaaaaaaatgaagaaagc
atagtaacacaatttacaatgggtactttggaagaactaggacttttgaagatggatttt
cttggtcttagaactcttactgttatgagagatgcagtaagaattataagagaaaataaa
ggaatagatattgatttagataatattgattttgaagataaagaagtttacaagatgata
ggacaggggcaaactgtaggggtatttcaattagagtctgctggaatgacatcctttatg
aaggagttaaaaccagattctctagaagatataatagcaggaataagtttatatagacca
ggtcctatggctgaaataccaagatatatagccaataaaaataatcccttaaatatagaa
tatcaaacagaaaaactagaacctatattgtccgttacatataattgtatagtttatcaa
gaacaagttatgcaaatagttagagacttggcaggatactctatgggacgtagtgatttg
gtaagacgtgccatgtctaagaaaaagcatgatgtaatggaacaggaaagaagaaatttc
atatatggtaatggagatgaaggtgtaaaaggatgcataaataatggaatagatgaaaat
gtagctaataatttatttgattctatgatggattttgcttcctatgcatttaacaaatcc
catgcagcagcttatgcagtagtaggttttcagaccgcttatttgattagatattatccc
acagagtttattgcagctatgctaaatagtgtaaagggggataatgataaagtatctttt
tatgttaatttcgcaaaaactttaggaatagaaatagtagctcctaatataaatgaaagc
tatagtaattttacagtaaaagataatagaataatatttggattaacagcagtaaaaaat
gtaggagaaagaggtatagataatatagtcttatctagagaacaaaagggcaattttaca
gatttaagtgattttttcaataaagtagatacctcaattataaataaaaggttagtagag
agtttaataaaagcaggagcctttgattgtttaaaggtatatcgttctaaaatgttagct
gtttttgaaaaaataatggatggcatacaaaagcaaaaaagaaacaacatagaaggtcag
gttaatttatttatggatattatggataacaaagaaagtagtatggatataaaatatcct
aatataaatgagtttgacaaaaaatatatacttcaaatggaaaaagaaatgacaggatta
tatttctctggtcatccattggaagaatatgaagaaacattaaaaattcaaacaaatcat
catatatcagatattatttctaaggaatctttagaaggaaacttggtagatacggtaagt
agtataaaagatggagataaagtagtagtaggtggtatgattactcacgtaagtaagaaa
ttaactagaaataatgatatgatggcatttatagtattagaagatctatattccagtata
gaagttatagtattccctaaaatttttaatatggccagaagcataataaatgaagatgaa
gtagttttattaaaaggaagagtaagtttaagagaggatgaacaaccaaagttaatttgt
gaatttatggagcctcttataaaaatcaattctgaaaaattatatatattagtagaagaa
aaaaaagatataaaactaaagttacaagaaatgaaaggtgtatttttgcaacataaaggt
aatatacctgtatacttttgtacaaataaagaaagaaaaaaatttagaattgatagagaa
ctttgggtaaatggggacagggaattggtggatgacttaagaaatatgtttggagaaaat
aatgtaaaaatactttaa
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