Clostridium botulinum A3 Loch Maree: CLK_2931
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Entry
CLK_2931 CDS
T00670
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbl
Clostridium botulinum A3 Loch Maree
Pathway
cbl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLK_2931 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbl03021
]
CLK_2931 (rpoC)
03400 DNA repair and recombination proteins [BR:
cbl03400
]
CLK_2931 (rpoC)
Enzymes [BR:
cbl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLK_2931 (rpoC)
Transcription machinery [BR:
cbl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLK_2931 (rpoC)
DNA repair and recombination proteins [BR:
cbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLK_2931 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Ead_Ea22
Motif
Other DBs
NCBI-ProteinID:
ACA54678
UniProt:
B1KSN2
LinkDB
All DBs
Position
complement(3813360..3816896)
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVLDPKETPLLKKQLLNEKEYRESIDKYGDDSFVAAMGAEAVKTLL
DEIDLEQSSIELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVQNGLAHNIKSAKRMVERVQPQVWDVLEEVISDHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNI
LKPSDGKPVSVPTQDMVLGSYYLTMDKDGVKGEGKVFSCPEEVLMAYQCKAVDIHAKIKV
RLKRVVDGETIEGIIETTPGKIIFNESIPQDLGYIDRTIPENKLKLEVDFLVSKKTLGGI
ITRCYMKHGATKTSIMLDKIKAKGYHYSTIGAITISTSDMVVPEAKRELLENTEKQVEKI
QKMYRRGFISEEERYEKVIDLWTKTTEDVANALMGSLDSFNPIYMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRQEDCGTEEGYEVSEIKEGNEVIEPLVERLSGRYPSEDIIHPTTGEVIVK
RNTYMNEDIAKKVSDAGIKKVKIRSVFTCKSKHGVCARCYGMNMATSQKIHIGEAVGIVA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEET
KKKRTIIVVTDDGEEVSYDIPFGSRIKVKNGDIIAAGDEITEGSINPHDILRIKGVDGVK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIKIEDSGDTELLPGTMIDVFDFEEANK
EILEKGGEPAVGRIALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKEN
VIIGKLIPAGTGMTRYRSIQINTDDENIEEDSIDSIEV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgagttaaataattttgatgctttacaaataggtttagcttcaccagaaaagata
agagagtggtcaagaggtgaagttaaaaagccagagactataaattatagaacactaaag
ccagaaagagatggtttgttctgtgaaagaattttcggccctatgaaggattgggaatgt
cattgtggtaaatataagagaataagatataagggcatagtttgtgatagatgcggagta
gaggttactaaagctaaagtaagacgtgagagaatggggcatatagaacttgctgcccct
gtatctcatatatggtatttcaaaggaattccatcaagaatgggattaatattagatatg
tctccaagagctttagaaaaagttttatactttgcttcgtatgtagtattagatccaaaa
gaaacacctcttttaaagaaacaattattaaatgaaaaagagtatagagaatctatagac
aaatatggagatgacagttttgttgcagcaatgggtgcagaggctgtaaagactctttta
gatgaaatagatttagaacaatcatctattgaacttaaagaagagttaaaaacaagtaca
ggacaaaagaaaataagaataataagaagattagaggtagtagaatcctttagaaaatca
ggaaatagacctgattggatggttatagatgttataccagtaattccacctgatttaaga
ccgatggttcaattagacggaggaagatttgctacatctgatttaaatgatttgtataga
agagttataaataggaataacagattaaaaaaattgttagacctaggggctccagatata
attgtaagaaatgaaaaaagaatgcttcaagaagcagtagatgctttaatagataatggt
agaagagggagaccagtaacaggaccagggaatagacctcttaaatcattatcagatatg
ttaaagggtaagcaaggtagatttagacaaaacttactaggaaagcgtgttgactattca
gggcgttcagttatagttgtagggcctgaattaaaaatgtaccaatgtggtttaccaaaa
gaaatggcccttgaattatttaaaccatttgttatgaaaaaacttgttcaaaatgggtta
gcgcataatataaaaagtgctaagagaatggtagaaagagttcaacctcaagtttgggat
gtactagaagaagttatttctgatcatccagtattattaaaccgtgcacctactcttcac
agattaggaattcaagccttccaacctgtattagtagagggaagagcaattaaacttcat
ccacttgtatgtacagcttataatgcagactttgatggagaccaaatggctgttcatgtg
cctttatcagttgaagctcaagcagaggcaagattcctaatgctagcagcacataatata
ttaaaaccatctgatggtaaaccagtgtctgtacctacacaagatatggttttaggttct
tattacttaacaatggataaggatggagtaaagggtgaaggaaaagtattttcttgccct
gaagaagtacttatggcatatcaatgcaaagcggttgatatacatgctaaaataaaagta
agattaaagagagttgtagacggagagactattgaaggaataatagaaacaacaccagga
aaaattatatttaatgaatctataccacaggatttaggatatattgatagaacaatacct
gaaaataaattaaaattggaagtagattttcttgtatctaaaaagacattaggtggaata
atcactagatgttatatgaaacatggtgcaacaaagacttctataatgttagataaaata
aaagcaaaaggataccattattctactataggagctattactatttctacttctgatatg
gtagtgccagaagctaaaagagaattactagaaaatacagagaaacaagtagaaaaaata
caaaaaatgtatcgtagagggtttatatctgaagaagaaagatatgaaaaagttattgac
ctttggactaaaacaacagaggatgtagctaatgctcttatgggaagtttggatagcttt
aatcctatatatatgatggctgattcaggagccagaggttctaaaagtcagataaaacaa
ttagcaggtatgagaggtcttatggctaatccatcaggtaaaattatagagttaccaata
aaagcttcttttagggaaggcctagatgtgttagagtattttatatcaacacatggtgct
agaaaaggtaacgcagatacagctttaaaaacagctgactcaggatatttaactagaaga
cttgttgacgtttcacaggatgttatagtaaggcaagaagattgtggaacagaagaagga
tacgaagtatctgaaataaaagaaggaaatgaagtaatagagcctttagtcgaaagatta
tcaggtagatatccttcagaagatattattcatcctacaacaggagaagtaatagtaaaa
agaaacacatatatgaatgaagatatagctaagaaggtatcagatgcaggaattaaaaaa
gttaaaataagatctgtattcacttgtaaatcaaaacatggtgtttgtgctagatgttat
ggtatgaatatggctacatcacaaaaaattcatataggtgaagcagttggtattgttgct
gctcaaagtataggagaaccgggaactcagcttacaatgagaacattccatacaggtggt
gttgctggagctgatataactcaaggtcttccaagggttgaagagcttttcgaagctaga
aaacctaaggggttggctattgtaagtgaagtatcaggaacagtaaaaatggaagaaact
aagaaaaaaagaacaataatagttgtaactgatgacggtgaagaagtttcctacgatatt
ccatttggttctagaataaaagttaaaaatggagatattatagcagcaggagatgaaata
acagaaggttcaataaatccacatgatattttaagaataaaaggtgttgacggagttaaa
aattatcttttatcagaagttcaaaaagtttatagactacaaggtgttgatataaatgat
aaacatcttgaagtagttataagacaaatgacaagaaagataaaaattgaagattcagga
gatacagaattattacctggaacaatgatagatgtttttgattttgaagaagccaataaa
gaaatattagaaaaaggtggagagccagcagtaggtagaatagctttattaggaataaca
aaagctgcactagctacagattcattcctttcagctgcatcattccaagaaactacaaga
gttcttacagatgctgctataaaagggaaaattgatccactattaggtttaaaagaaaat
gtaattattggtaaattaatacctgcaggtacaggtatgacaagatatagatctattcag
ataaatactgatgatgaaaatattgaagaagattctatagattcaatagaagtatag
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