| Entry |
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| Symbol |
rpoB
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| Name |
(GenBank) DNA-directed RNA polymerase, beta subunit
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| KO |
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| Organism |
cbl Clostridium botulinum A3 Loch Maree
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:cbl00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLK_2932 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cbl03021]
CLK_2932 (rpoB)
03400 DNA repair and recombination proteins [BR:cbl03400]
CLK_2932 (rpoB)
Enzymes [BR:cbl01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLK_2932 (rpoB)
Transcription machinery [BR:cbl03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLK_2932 (rpoB)
DNA repair and recombination proteins [BR:cbl03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLK_2932 (rpoB)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(3816917..3820636)
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| AA seq |
1239 aa
MVHPVQVGKRTRMSFSRLKEVGQMPNLIEVQLDSYDWFLKEGLQEVFDDINPIQDYTGNL
NLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLLNKETGEIKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYDMTVDKTGSKLFSATVIPNRGAWLEYETDSNNII
YVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNTKTREEALLEIYKRL
RPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHLRITNQIADQDIVNPQTG
EILVQKGEKIDKDKAIEIQNCGVNEVYIKIDDKSFKVIGNHFVDIHSLISFDISDLNIKE
YVFYPVLKEILDNYADEESIKEEIRKNIYRLIPKHIIREDIYATINYELGLSYDIGYKDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAASIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATFAKVNEYGFIETPYRRIDPKNKRATNDIVYMTADEEDLYVIARSDEP
IDENGYFMDDKVTVRAKEEVLVVPVSEVEYMDISPRQLVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEYKAATDSGVLPKAKNAGTVAYVSADEIRVRRDSDGGI
DKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWE
GYNYEDAMLISEQLVREDVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDER
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDVKIFTRENGDELPPGVNKLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGLAASKLGWHIATPVFDGAIESDIVDCLRKA
GYSEDGKTVLYDGRTGEPFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPES
FKVLIKELQALCLDVKVLNDDNQEIKLKESVDEDVDELEVNIEGAENQLEDKEEKEEEKE
ENYKEDSDEYDDLREEDVEPDLEELSLDDLDLDDFGDEH |
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| NT seq |
3720 nt +upstreamnt +downstreamnt
atggtacatcctgtccaagttggcaaaaggactcgtatgagcttttctaggcttaaagag
gttggtcaaatgccaaaccttatagaagttcagttagactcatatgattggtttttaaaa
gaagggttacaagaagtttttgacgatattaacccgattcaagattatacaggtaatcta
aatttagaatttgtaggttacaaactggatttagatagtattaagtactctgttgaagag
tgtaaagaaagagattctacttatgcagcaccattaaaagtaaaagttagacttttaaat
aaggaaactggcgaaataaaagaacaagaagtttttatgggggacttccctttaatgaca
gaacaaggaacctttataataaacggtgcagaaagagttatagtaagccaattagttaga
tcaccaggggtttattatgacatgactgtagataaaacaggaagtaaattattttcagct
acagttatacctaacagaggtgcatggttagaatatgaaacagattcaaataacataata
tatgtaagaattgacaagacacgaaaattaccaattactatattagcaagagcattaggt
tatggaacagatgctgaaataatagaatttttcggagaagatgaaagattaaaagcaaca
atagaaaaagataacactaagactagagaagaggctttacttgaaatatataagagatta
agaccaggtgaaccacctactgtggatagtgcagaatctttaattgaatctttattcttc
gatgctaaaagatatgatttatcaagagttggaagatataaatttaataaaaaattagca
atccatttaagaataacaaatcaaattgcagatcaagatatagttaatccacaaacagga
gaaattttagtacaaaaaggtgaaaaaatagataaagataaagctattgaaatacaaaac
tgtggcgttaacgaagtatatatcaaaatagatgataagtcatttaaagtaattggcaat
cactttgtagacatacatagtttgatttcattcgatataagtgatttaaatattaaagaa
tatgtattctatcctgttttaaaagaaatactagataattatgctgatgaagaaagtata
aaagaagaaataagaaagaatatatatagattaattcctaaacatattataagagaagat
atatatgctaccataaattatgaattaggattaagttatgatattggttataaagatgat
atagatcatttaggaaatagaaggttgagatcagtaggagaattattacaaaatcaattt
agaattggtttatctagaatggaaagagttgttaaagaaagaatgacaattcaagatcaa
gaagtaataactcctcaagctttaataaatattagacctgtagctgcatccattaaagaa
ttttttggtagttcacaattatcacaatttatggatcaaacaaatcctctatcagaatta
acacataaaagaaggttatcagctttaggaccaggaggactttcaagagaaagggcaggt
tttgaagtaagagacgttcaccattcacattatggaagaatgtgtcctatagaaactcca
gaagggcctaatataggtcttataaattctttagctacatttgctaaagttaatgaatat
ggatttatagaaacaccatatagaagaatagatcctaagaataaaagagccacaaatgat
atagtatatatgacagcggacgaagaagatttatacgtaatagctagatcagatgaacca
attgatgaaaatggatatttcatggatgataaggttacagttagggctaaagaggaagtt
ttagttgttccagttagtgaagtcgagtatatggatatatcaccaagacagttggtttct
gttgcaactgcaatgataccattccttgaaaatgatgatgccagccgtgcacttatggga
tcaaacatgcaacgtcaagcagtaccattattaaagccacaggctccgatagttggaaca
ggcatagaatataaagctgcaacggattcaggggttcttccaaaggctaaaaatgcagga
acagtagcatatgtttcagcagatgaaataagagtaagaagagatagcgatggaggaata
gataaatataaattattgaaattcaaaagatctaaccaaggaacatgtataaatcaaaga
ccaattgtttctaaaggtgaagtagtagctaaggaaactctattggcagatggaccttct
acagatcttggagaaatagcacttggtaaaaatattcttatgggctttataacttgggaa
ggatataattacgaggatgctatgctaatttcagaacaattagtaagggaagacgtattt
acatctatacacatagaagaatatgaagcagaagctagagatacaaaactaggaccagaa
gaaataacaagagatatacctaacgtaggagaagaagctcttaaggatatagatgaaaga
ggtattataagaattggtgctgaagttagatcaggagatatattagtaggtaaagttact
ccgaagggagaaactgaacttacagctgaagaaagattacttcgtgctatatttggagaa
aaagcaagagaagttagagatacatcacttagggttccacatggagaagcaggaattata
gttgatgttaaaatatttacaagagaaaatggtgatgagttaccaccaggagttaataaa
ttagttagatgctatatagctcaaaaaagaaaaatatcagtgggagataagatggcagga
agacatggtaataaaggggttatctctagagtgttaccagaggaagatatgccattctta
ccagatggaagaccacttcaaatatgcttaaatcctttaggggtaccatcacgtatgaat
ataggccaggtattagaagtacatttagggctagctgctagtaaattaggttggcatata
gccacacctgttttcgatggggcaatagaatctgatatagtagattgtttaagaaaagct
ggttattccgaggatggaaaaactgttctatatgatggaagaacaggagagccatttgat
aatagagtaacagtaggatatatgtatattttaaaattagcgcatttagttgatgataaa
atacatgctagatctacaggtccatactcactagtaactcaacaacctcttggaggtaaa
gctcaatttggaggtcaaagatttggtgagatggaagtttgggctttagaagcttatgga
gctgctcatactcttcaagaaatattaacagttaaatcagatgatgtagttggaagagtt
aaaacttatgaagctatagtaaagggagagaatattccagaacctggagttcctgaatct
ttcaaagttttaataaaagaattacaagcattatgtttagatgttaaagtattgaatgat
gataatcaggaaataaaattaaaggaatctgtagatgaagatgtagacgaattagaagta
aacatagaaggtgctgaaaatcaattagaagataaggaagaaaaagaggaagagaaagaa
gaaaattataaagaagatagtgatgaatatgatgacttaagagaagaggacgtagaacca
gatttagaagagttgtcattagatgacttagatttagatgattttggcgatgaacattaa |
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