Clostridium botulinum A3 Loch Maree: CLK_2932
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Entry
CLK_2932 CDS
T00670
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbl
Clostridium botulinum A3 Loch Maree
Pathway
cbl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLK_2932 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbl03021
]
CLK_2932 (rpoB)
03400 DNA repair and recombination proteins [BR:
cbl03400
]
CLK_2932 (rpoB)
Enzymes [BR:
cbl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLK_2932 (rpoB)
Transcription machinery [BR:
cbl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLK_2932 (rpoB)
DNA repair and recombination proteins [BR:
cbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLK_2932 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ACA56498
UniProt:
B1KSN3
LinkDB
All DBs
Position
complement(3816917..3820636)
Genome browser
AA seq
1239 aa
AA seq
DB search
MVHPVQVGKRTRMSFSRLKEVGQMPNLIEVQLDSYDWFLKEGLQEVFDDINPIQDYTGNL
NLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLLNKETGEIKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYDMTVDKTGSKLFSATVIPNRGAWLEYETDSNNII
YVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNTKTREEALLEIYKRL
RPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHLRITNQIADQDIVNPQTG
EILVQKGEKIDKDKAIEIQNCGVNEVYIKIDDKSFKVIGNHFVDIHSLISFDISDLNIKE
YVFYPVLKEILDNYADEESIKEEIRKNIYRLIPKHIIREDIYATINYELGLSYDIGYKDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAASIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATFAKVNEYGFIETPYRRIDPKNKRATNDIVYMTADEEDLYVIARSDEP
IDENGYFMDDKVTVRAKEEVLVVPVSEVEYMDISPRQLVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEYKAATDSGVLPKAKNAGTVAYVSADEIRVRRDSDGGI
DKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWE
GYNYEDAMLISEQLVREDVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDER
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDVKIFTRENGDELPPGVNKLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGLAASKLGWHIATPVFDGAIESDIVDCLRKA
GYSEDGKTVLYDGRTGEPFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPES
FKVLIKELQALCLDVKVLNDDNQEIKLKESVDEDVDELEVNIEGAENQLEDKEEKEEEKE
ENYKEDSDEYDDLREEDVEPDLEELSLDDLDLDDFGDEH
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaagttggcaaaaggactcgtatgagcttttctaggcttaaagag
gttggtcaaatgccaaaccttatagaagttcagttagactcatatgattggtttttaaaa
gaagggttacaagaagtttttgacgatattaacccgattcaagattatacaggtaatcta
aatttagaatttgtaggttacaaactggatttagatagtattaagtactctgttgaagag
tgtaaagaaagagattctacttatgcagcaccattaaaagtaaaagttagacttttaaat
aaggaaactggcgaaataaaagaacaagaagtttttatgggggacttccctttaatgaca
gaacaaggaacctttataataaacggtgcagaaagagttatagtaagccaattagttaga
tcaccaggggtttattatgacatgactgtagataaaacaggaagtaaattattttcagct
acagttatacctaacagaggtgcatggttagaatatgaaacagattcaaataacataata
tatgtaagaattgacaagacacgaaaattaccaattactatattagcaagagcattaggt
tatggaacagatgctgaaataatagaatttttcggagaagatgaaagattaaaagcaaca
atagaaaaagataacactaagactagagaagaggctttacttgaaatatataagagatta
agaccaggtgaaccacctactgtggatagtgcagaatctttaattgaatctttattcttc
gatgctaaaagatatgatttatcaagagttggaagatataaatttaataaaaaattagca
atccatttaagaataacaaatcaaattgcagatcaagatatagttaatccacaaacagga
gaaattttagtacaaaaaggtgaaaaaatagataaagataaagctattgaaatacaaaac
tgtggcgttaacgaagtatatatcaaaatagatgataagtcatttaaagtaattggcaat
cactttgtagacatacatagtttgatttcattcgatataagtgatttaaatattaaagaa
tatgtattctatcctgttttaaaagaaatactagataattatgctgatgaagaaagtata
aaagaagaaataagaaagaatatatatagattaattcctaaacatattataagagaagat
atatatgctaccataaattatgaattaggattaagttatgatattggttataaagatgat
atagatcatttaggaaatagaaggttgagatcagtaggagaattattacaaaatcaattt
agaattggtttatctagaatggaaagagttgttaaagaaagaatgacaattcaagatcaa
gaagtaataactcctcaagctttaataaatattagacctgtagctgcatccattaaagaa
ttttttggtagttcacaattatcacaatttatggatcaaacaaatcctctatcagaatta
acacataaaagaaggttatcagctttaggaccaggaggactttcaagagaaagggcaggt
tttgaagtaagagacgttcaccattcacattatggaagaatgtgtcctatagaaactcca
gaagggcctaatataggtcttataaattctttagctacatttgctaaagttaatgaatat
ggatttatagaaacaccatatagaagaatagatcctaagaataaaagagccacaaatgat
atagtatatatgacagcggacgaagaagatttatacgtaatagctagatcagatgaacca
attgatgaaaatggatatttcatggatgataaggttacagttagggctaaagaggaagtt
ttagttgttccagttagtgaagtcgagtatatggatatatcaccaagacagttggtttct
gttgcaactgcaatgataccattccttgaaaatgatgatgccagccgtgcacttatggga
tcaaacatgcaacgtcaagcagtaccattattaaagccacaggctccgatagttggaaca
ggcatagaatataaagctgcaacggattcaggggttcttccaaaggctaaaaatgcagga
acagtagcatatgtttcagcagatgaaataagagtaagaagagatagcgatggaggaata
gataaatataaattattgaaattcaaaagatctaaccaaggaacatgtataaatcaaaga
ccaattgtttctaaaggtgaagtagtagctaaggaaactctattggcagatggaccttct
acagatcttggagaaatagcacttggtaaaaatattcttatgggctttataacttgggaa
ggatataattacgaggatgctatgctaatttcagaacaattagtaagggaagacgtattt
acatctatacacatagaagaatatgaagcagaagctagagatacaaaactaggaccagaa
gaaataacaagagatatacctaacgtaggagaagaagctcttaaggatatagatgaaaga
ggtattataagaattggtgctgaagttagatcaggagatatattagtaggtaaagttact
ccgaagggagaaactgaacttacagctgaagaaagattacttcgtgctatatttggagaa
aaagcaagagaagttagagatacatcacttagggttccacatggagaagcaggaattata
gttgatgttaaaatatttacaagagaaaatggtgatgagttaccaccaggagttaataaa
ttagttagatgctatatagctcaaaaaagaaaaatatcagtgggagataagatggcagga
agacatggtaataaaggggttatctctagagtgttaccagaggaagatatgccattctta
ccagatggaagaccacttcaaatatgcttaaatcctttaggggtaccatcacgtatgaat
ataggccaggtattagaagtacatttagggctagctgctagtaaattaggttggcatata
gccacacctgttttcgatggggcaatagaatctgatatagtagattgtttaagaaaagct
ggttattccgaggatggaaaaactgttctatatgatggaagaacaggagagccatttgat
aatagagtaacagtaggatatatgtatattttaaaattagcgcatttagttgatgataaa
atacatgctagatctacaggtccatactcactagtaactcaacaacctcttggaggtaaa
gctcaatttggaggtcaaagatttggtgagatggaagtttgggctttagaagcttatgga
gctgctcatactcttcaagaaatattaacagttaaatcagatgatgtagttggaagagtt
aaaacttatgaagctatagtaaagggagagaatattccagaacctggagttcctgaatct
ttcaaagttttaataaaagaattacaagcattatgtttagatgttaaagtattgaatgat
gataatcaggaaataaaattaaaggaatctgtagatgaagatgtagacgaattagaagta
aacatagaaggtgctgaaaatcaattagaagataaggaagaaaaagaggaagagaaagaa
gaaaattataaagaagatagtgatgaatatgatgacttaagagaagaggacgtagaacca
gatttagaagagttgtcattagatgacttagatttagatgattttggcgatgaacattaa
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integrated database retrieval system
