Clostridium botulinum A3 Loch Maree: CLK_3003
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Entry
CLK_3003 CDS
T00670
Symbol
hup
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
cbl
Clostridium botulinum A3 Loch Maree
Brite
KEGG Orthology (KO) [BR:
cbl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbl03032
]
CLK_3003 (hup)
03036 Chromosome and associated proteins [BR:
cbl03036
]
CLK_3003 (hup)
03400 DNA repair and recombination proteins [BR:
cbl03400
]
CLK_3003 (hup)
DNA replication proteins [BR:
cbl03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CLK_3003 (hup)
Chromosome and associated proteins [BR:
cbl03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
CLK_3003 (hup)
DNA repair and recombination proteins [BR:
cbl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
CLK_3003 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
Peptidase_C80
HU-DNA_bdg
DUF2267
Lmo2446-like_N
Motif
Other DBs
NCBI-ProteinID:
ACA57058
LinkDB
All DBs
Position
complement(3877597..3877875)
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AA seq
92 aa
AA seq
DB search
MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG
RNPRTKEEITIPASIAPVFKAGKELKEKVNKK
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaatcagaattaattacaagcatggcagaaaaatcaaaattaactaaaaaggat
gcagaaacagctttaaaggcatttatagaaagtgttgaagaagcattagaaggtggagaa
aaagttcaattagttggctttggtacttttgaaactagggaaagagctgaaagagtgggt
agaaatccaagaactaaggaagaaataactatacctgcatcaatagcacctgttttcaaa
gcaggaaaagaactaaaagaaaaagtaaacaaaaaataa
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