KEGG   Clostridium botulinum A3 Loch Maree: CLK_3008
Entry
CLK_3008          CDS       T00670                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
cbl  Clostridium botulinum A3 Loch Maree
Pathway
cbl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cbl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CLK_3008 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cbl03400]
    CLK_3008 (mfd)
Enzymes [BR:cbl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CLK_3008 (mfd)
DNA repair and recombination proteins [BR:cbl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CLK_3008 (mfd)
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF CarD_TRCF_RID Helicase_C ResIII RecG_dom3_C UB2H IstB_IS21
Other DBs
NCBI-ProteinID: ACA55097
UniProt: B1KTE1
LinkDB
Position
complement(3882972..3886478)
AA seq 1168 aa
MRLEGLVSPLSLSEDFKSLLNNINLNKFPIGAYGLSDSGKNYFISNIFANVDESLVIFTH
SDVEARKIYEDLSLYTTEVYYLPTKEVVFYNIYAISGDLRWERLKVINEILSPKKKIIVT
CIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGI
IDIYPPISSEPYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGL
KNIKTDLDKLVLKLNKKEDKEKIQSIINSNLEQLNESWSFENIDTFIPYFYNKTNSLLDY
IEGSLIIIDDVKRCLGKLDSTYLEFNEDYNKFLGKGCILPKQAEIVHDKERMIEQLEFKK
IINIENIKKTIDRLKPKSVLTFNQTTLQGYNGKIEFLIEDIKEKKKEKYKILILSGTRSR
GERLVNHLRDMGVESSYKDIVREIKPGEVVITFGNQGNGFQYYDIKLSVISDKDIFGQFK
KKGKKKQNKKGTGKIKSFTELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSD
DKLYVPVEQLDMVQRYIGSEGKKPKVNKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRA
TLKGYKYSDDTVWQKQFEEEFPYEETPDQLLAIEDIKRDMESPKPMDRLLCGDVGYGKTE
VAIRAAFKAVMDGKQVAFLVPTTILAQQHYNNFKQRFSDFPITVDVISRFRTLSEQKATI
KSIKEGNVDILIGTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSA
TPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVY
NRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMD
IKNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDF
TELGSGFKIALKDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPVE
TSVELKIDAYIPNTYIKDETQKIEVYKKIASIDSKEEFMDIEEELEDRFSDIPISVYNLM
NISYIRSLGKKLDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAI
GYNIKNIKKEQLLPIIRNFLEHIVNNNQ
NT seq 3507 nt   +upstreamnt  +downstreamnt
atgagactagaaggtttagtatcacctttgagtttaagtgaagattttaaaagtttatta
aataatataaatttaaataaatttcctataggtgcatatggtttgtcggattctggtaaa
aattattttatcagcaatatatttgctaatgtggatgaatctttagtgatttttactcat
agtgatgtggaagctagaaaaatatatgaagatttaagtttatatacaacggaagtatat
tatttacctactaaagaagtcgtattttataatatttatgctatatcaggagatttaaga
tgggaaagacttaaagttataaatgaaattttaagtcctaagaagaaaataatagttact
tgtatagaatctttagaatctgcatatatacctaaagagttatatacaaagtatacattt
aaattatctgttggagatattatagaaataaagttattagaagaaaagttgataaaaagc
ggatatgaaagagtagatatagtagaaaataaaggagagttctctgtaagaggaggaata
atagatatatatcctcctatttcatcagaaccctatagactggaattttttgatgacgaa
atagattctataagaaactttaatgtgaattctcaaaggagtattgaaaaagttaataat
ataaatatatttccagctaaagaaattatacttgaagaagaaaatataagcttaggatta
aaaaatataaaaactgatttagataaattggttctgaaattaaataaaaaggaagataaa
gagaagatacaaagtataataaacagcaatttggaacagttaaatgaaagctggtctttt
gaaaatatagatacttttattccttatttttataataaaactaacagtttattagattat
atagaaggttctttgattattatagatgatgttaaacggtgcttaggtaagttagatagt
acttatttagagtttaatgaagactataataaatttttaggaaagggatgcatattacct
aaacaggcggaaattgttcatgacaaagaaagaatgatagagcagttagagtttaaaaaa
ataattaacatagaaaacataaaaaaaactatagatagattaaagcccaaatctgtttta
acatttaatcaaacaaccctacaggggtataatggtaaaattgaatttttgatagaggat
ataaaagaaaagaaaaaagagaaatataaaatattaattttatcaggaactagaagtaga
ggggaaagattagtaaatcatcttagagatatgggagtagagagttcctataaagatata
gtaagagaaattaaaccaggagaagtggttataacttttgggaatcaagggaatggtttt
cagtattatgatataaaattaagtgttatatctgataaggatatatttggacaattcaaa
aagaagggcaaaaagaagcagaataaaaaaggaacaggaaaaattaaaagtttcaccgag
cttaaaccgggagatttcgtagtccatgctaatcatggtattggggtatttaaaggtata
aagcaattagaattacaagggaacaaaaaggattatttagaattaatatatcattcagat
gataagctttatgtaccagtagaacagttagatatggtgcaaagatatataggcagtgag
ggtaaaaaacctaaagtaaataagctaggaagctcagagtggactaaaactaaaaataag
gttaaaaaatctatagaagaaattgcagaggatttagtaaaattatatgctataagagct
accctaaaaggctataagtattctgatgatacagtatggcaaaagcaatttgaagaagaa
tttccttatgaggaaacaccagatcaattgttagctatagaagatataaaaagggatatg
gagtcaccaaaacctatggataggcttttatgtggagacgtgggttatggtaaaactgag
gttgctataagagcggcctttaaggcagttatggatgggaagcaggtagcatttttagtt
cctactaccatattagctcaacaacattataataatttcaaacaaagattttcggatttc
cctataacagttgatgtcataagtagatttagaactttatcagagcaaaaggctaccata
aagtctattaaagaaggaaatgtagatatactaataggaactcatagaattctccaaaaa
gatataaaatttaaggatttaggattattaataatagatgaggaacaaagattcggagta
aagcataaagaaaaaatgaaaaatttaaagaaaaatgtagatgttttaactctaagtgct
acccctatacctaggactttgcatatgtcattagtaggtgttagggatataagtgttata
gaaactcctccagaggaaagatatcctgttcaaacttatgtagtagagtataatgatcaa
ctgataagagattctatattaagagaaattagtagaggtggacaaatttattttgtatac
aatagagttgagagtattcatgagatggcgtcatatatatcaaaactagtaccagaagga
agagttcagatagctcacggacaaatgaaagaaaaagagctagaaaacgtagtattggac
tttacagaaaataaatttgatatattaatagctacaacaataatagaaacaggtatggat
ataaaaaatgttaacactatgattatatatgacgcagataaaatgggattatctcagcta
tatcaattaagaggaagagtaggtagaacaaatagaatggcatattgttacttaacctat
aaaagggataaaatacttacagaagtagcagaaaaacgattgaaagccataaaggatttt
acggaattaggctcaggttttaagatagctttaaaggatttagaaataagaggagcaggt
aatatgatgggatctgcacagcatggacatatggcttctataggctatgacctttattgc
aggatgcttgaggatactataaagttagttagaggtgatatagataaagagccagtagaa
acttcagtagaattaaagatagatgcttatataccaaatacttatataaaagatgaaaca
caaaagatagaagtgtataaaaagattgcatctatagattctaaagaagagtttatggat
atagaagaggaattagaagatagattttcagatatcccaatatccgtttataatttaatg
aatatatcttatataagaagcttaggtaagaagcttgatatagaggaaataaaagaaatt
tcaaatgaagttgtttttcaatttgaagacaagagtagtctaagagaaaaaattgtaaag
attataatggataagtattcaaaagaagtagcatttaaattaaatgaaaagcctgctata
ggatataatataaagaatataaaaaaggaacagttattaccaattataagaaatttttta
gaacatatagtaaacaacaatcaataa

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