Clostridium botulinum A3 Loch Maree: CLK_3008
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Entry
CLK_3008 CDS
T00670
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbl
Clostridium botulinum A3 Loch Maree
Pathway
cbl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLK_3008 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbl03400
]
CLK_3008 (mfd)
Enzymes [BR:
cbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLK_3008 (mfd)
DNA repair and recombination proteins [BR:
cbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLK_3008 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ACA55097
UniProt:
B1KTE1
LinkDB
All DBs
Position
complement(3882972..3886478)
Genome browser
AA seq
1168 aa
AA seq
DB search
MRLEGLVSPLSLSEDFKSLLNNINLNKFPIGAYGLSDSGKNYFISNIFANVDESLVIFTH
SDVEARKIYEDLSLYTTEVYYLPTKEVVFYNIYAISGDLRWERLKVINEILSPKKKIIVT
CIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGI
IDIYPPISSEPYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGL
KNIKTDLDKLVLKLNKKEDKEKIQSIINSNLEQLNESWSFENIDTFIPYFYNKTNSLLDY
IEGSLIIIDDVKRCLGKLDSTYLEFNEDYNKFLGKGCILPKQAEIVHDKERMIEQLEFKK
IINIENIKKTIDRLKPKSVLTFNQTTLQGYNGKIEFLIEDIKEKKKEKYKILILSGTRSR
GERLVNHLRDMGVESSYKDIVREIKPGEVVITFGNQGNGFQYYDIKLSVISDKDIFGQFK
KKGKKKQNKKGTGKIKSFTELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSD
DKLYVPVEQLDMVQRYIGSEGKKPKVNKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRA
TLKGYKYSDDTVWQKQFEEEFPYEETPDQLLAIEDIKRDMESPKPMDRLLCGDVGYGKTE
VAIRAAFKAVMDGKQVAFLVPTTILAQQHYNNFKQRFSDFPITVDVISRFRTLSEQKATI
KSIKEGNVDILIGTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSA
TPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVY
NRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMD
IKNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDF
TELGSGFKIALKDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPVE
TSVELKIDAYIPNTYIKDETQKIEVYKKIASIDSKEEFMDIEEELEDRFSDIPISVYNLM
NISYIRSLGKKLDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAI
GYNIKNIKKEQLLPIIRNFLEHIVNNNQ
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgagactagaaggtttagtatcacctttgagtttaagtgaagattttaaaagtttatta
aataatataaatttaaataaatttcctataggtgcatatggtttgtcggattctggtaaa
aattattttatcagcaatatatttgctaatgtggatgaatctttagtgatttttactcat
agtgatgtggaagctagaaaaatatatgaagatttaagtttatatacaacggaagtatat
tatttacctactaaagaagtcgtattttataatatttatgctatatcaggagatttaaga
tgggaaagacttaaagttataaatgaaattttaagtcctaagaagaaaataatagttact
tgtatagaatctttagaatctgcatatatacctaaagagttatatacaaagtatacattt
aaattatctgttggagatattatagaaataaagttattagaagaaaagttgataaaaagc
ggatatgaaagagtagatatagtagaaaataaaggagagttctctgtaagaggaggaata
atagatatatatcctcctatttcatcagaaccctatagactggaattttttgatgacgaa
atagattctataagaaactttaatgtgaattctcaaaggagtattgaaaaagttaataat
ataaatatatttccagctaaagaaattatacttgaagaagaaaatataagcttaggatta
aaaaatataaaaactgatttagataaattggttctgaaattaaataaaaaggaagataaa
gagaagatacaaagtataataaacagcaatttggaacagttaaatgaaagctggtctttt
gaaaatatagatacttttattccttatttttataataaaactaacagtttattagattat
atagaaggttctttgattattatagatgatgttaaacggtgcttaggtaagttagatagt
acttatttagagtttaatgaagactataataaatttttaggaaagggatgcatattacct
aaacaggcggaaattgttcatgacaaagaaagaatgatagagcagttagagtttaaaaaa
ataattaacatagaaaacataaaaaaaactatagatagattaaagcccaaatctgtttta
acatttaatcaaacaaccctacaggggtataatggtaaaattgaatttttgatagaggat
ataaaagaaaagaaaaaagagaaatataaaatattaattttatcaggaactagaagtaga
ggggaaagattagtaaatcatcttagagatatgggagtagagagttcctataaagatata
gtaagagaaattaaaccaggagaagtggttataacttttgggaatcaagggaatggtttt
cagtattatgatataaaattaagtgttatatctgataaggatatatttggacaattcaaa
aagaagggcaaaaagaagcagaataaaaaaggaacaggaaaaattaaaagtttcaccgag
cttaaaccgggagatttcgtagtccatgctaatcatggtattggggtatttaaaggtata
aagcaattagaattacaagggaacaaaaaggattatttagaattaatatatcattcagat
gataagctttatgtaccagtagaacagttagatatggtgcaaagatatataggcagtgag
ggtaaaaaacctaaagtaaataagctaggaagctcagagtggactaaaactaaaaataag
gttaaaaaatctatagaagaaattgcagaggatttagtaaaattatatgctataagagct
accctaaaaggctataagtattctgatgatacagtatggcaaaagcaatttgaagaagaa
tttccttatgaggaaacaccagatcaattgttagctatagaagatataaaaagggatatg
gagtcaccaaaacctatggataggcttttatgtggagacgtgggttatggtaaaactgag
gttgctataagagcggcctttaaggcagttatggatgggaagcaggtagcatttttagtt
cctactaccatattagctcaacaacattataataatttcaaacaaagattttcggatttc
cctataacagttgatgtcataagtagatttagaactttatcagagcaaaaggctaccata
aagtctattaaagaaggaaatgtagatatactaataggaactcatagaattctccaaaaa
gatataaaatttaaggatttaggattattaataatagatgaggaacaaagattcggagta
aagcataaagaaaaaatgaaaaatttaaagaaaaatgtagatgttttaactctaagtgct
acccctatacctaggactttgcatatgtcattagtaggtgttagggatataagtgttata
gaaactcctccagaggaaagatatcctgttcaaacttatgtagtagagtataatgatcaa
ctgataagagattctatattaagagaaattagtagaggtggacaaatttattttgtatac
aatagagttgagagtattcatgagatggcgtcatatatatcaaaactagtaccagaagga
agagttcagatagctcacggacaaatgaaagaaaaagagctagaaaacgtagtattggac
tttacagaaaataaatttgatatattaatagctacaacaataatagaaacaggtatggat
ataaaaaatgttaacactatgattatatatgacgcagataaaatgggattatctcagcta
tatcaattaagaggaagagtaggtagaacaaatagaatggcatattgttacttaacctat
aaaagggataaaatacttacagaagtagcagaaaaacgattgaaagccataaaggatttt
acggaattaggctcaggttttaagatagctttaaaggatttagaaataagaggagcaggt
aatatgatgggatctgcacagcatggacatatggcttctataggctatgacctttattgc
aggatgcttgaggatactataaagttagttagaggtgatatagataaagagccagtagaa
acttcagtagaattaaagatagatgcttatataccaaatacttatataaaagatgaaaca
caaaagatagaagtgtataaaaagattgcatctatagattctaaagaagagtttatggat
atagaagaggaattagaagatagattttcagatatcccaatatccgtttataatttaatg
aatatatcttatataagaagcttaggtaagaagcttgatatagaggaaataaaagaaatt
tcaaatgaagttgtttttcaatttgaagacaagagtagtctaagagaaaaaattgtaaag
attataatggataagtattcaaaagaagtagcatttaaattaaatgaaaagcctgctata
ggatataatataaagaatataaaaaaggaacagttattaccaattataagaaatttttta
gaacatatagtaaacaacaatcaataa
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