Campylobacter blaseri: CBLAS_0617
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Entry
CBLAS_0617 CDS
T06820
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbla
Campylobacter blaseri
Pathway
cbla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBLAS_0617 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbla03400
]
CBLAS_0617 (mfd)
Enzymes [BR:
cbla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBLAS_0617 (mfd)
DNA repair and recombination proteins [BR:
cbla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CBLAS_0617 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
SNF2-rel_dom
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QKF85809
LinkDB
All DBs
Position
602798..605752
Genome browser
AA seq
984 aa
AA seq
DB search
MQAKVYEYFLKNKKDILICENDKEALTCQDALKFLGFETYVLPDFRAEYGDDLRSYYEEL
IGISKELSGYYKSKNKNKIIISPIKTILKKLPAKKHLQIKSINFGDKINLNELKDEIIRF
GYEVVDIVEMSGEVSFRGEIIDIFPVGENEPYRILLDEDLVESIRVFDETTQISEKKEYE
SVEISPFIASLSEDEYEKTTKEIESLDTNSLISDLNSLGFWAIDDFIDYLDSFSHISVKK
FDEDEFSYVKNIIKKFEIIPQPINFKDFDTTFSNELLSFHKEKKIKILAKNSAIFESLEL
TPKDNLELIISDLVINLISKDELVISLNKFKKKKRVKKTSIIIDELKVGDFVVHEEYGVG
KFMGLELATVMGSQREFVSIIYQNNDKLLLPVENLNMIDRYIASGVAILDRLGKGSFAKI
KEKVRAKLFAIASKIIEIAAKRELVEGKIIKSDFVEYSKFLQEAGFEYTKDQQTCVDAIL
KDLKSGKVMDRLVSGDVGFGKTEIAMNAIFATVKSGYQALFFVPTTLLSSQHYQSLVKRF
EDFNIPVFRLDRFTTTAGKNALKKALFDKVPLVCVGTHSLLNLQANNIGLIVIDEEHKFG
VKQKEKLKAISANSHLLSISATPIPRSLNMALSSIKSYSTLATPPSDRLDVRTLVKEWDE
KVIKEAISRELRRGGQVFYVHNRISTIDEVKKSLLRIFPNLKILILHSQIDMKTTELEVE
KFLNKEYDLMLCTSIVESGIHMPNANTIIIENANNFGIADLHQLRGRVGRSDKQGYCYYL
IEDKNTLTQDSLKRLVALENNSFLGSGSVLAYHDLEIRGGGNLVGEAQSGHIEAIGYSLY
LKMLEDEINALLNKKAKVLSSVDMKLSINAFLNSEYIKEDRIRLELYRRLSKANEVNEIY
EISGEMEDRFGKPDVYTKQFLDIMLIKIMANKLNIKSISNYEMNISYVKFDDSKVVLKSR
SKDDDDIIDTLLSHLRKELKSGLV
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcaaaagtttatgagtattttttaaaaaacaaaaaagatatattaatatgtgaa
aatgataaagaggcattaacttgtcaagatgctttaaaatttttaggatttgaaacatat
gttttgcctgattttagagctgaatacggcgatgatttgcgatcatactatgaagagcta
attggcataagtaaagagttaagcggatattataagagtaaaaataaaaataaaatcata
atctcaccaataaaaactatactaaaaaaactaccagctaaaaaacacctgcaaataaaa
tccattaattttggtgataagataaatttaaatgagctaaaagatgagataattcgtttt
ggatatgaggttgttgatatagttgagatgagcggtgaggttagttttagaggtgagata
attgatatttttcctgttggagaaaatgaaccttataggatacttttagatgaagattta
gttgaaagtattagagtttttgatgaaactacacagataagtgaaaaaaaagagtacgaa
agtgttgaaatttcgccatttatagcaagtttaagcgaagatgagtatgaaaaaacaaca
aaagagatagagagtttggatactaattcgctaattagtgatttaaactcacttgggttt
tgggcgattgatgattttatagattatttagatagttttagccatataagtgttaaaaaa
tttgatgaagatgaatttagctatgtaaagaatataattaaaaaatttgaaataattcca
cagcctataaattttaaagactttgatactactttttcaaatgaacttcttagttttcac
aaagaaaaaaagattaaaattttagcaaaaaatagtgctatttttgaaagtttagagtta
accccaaaagataatttagagcttatcataagtgatttggttataaatttaatctcaaaa
gatgagttagtaatctctttaaataaatttaaaaagaaaaaaagagttaaaaaaactagc
attataattgatgaacttaaggttggcgattttgtagttcatgaagagtatggtgttggt
aaatttatgggcttagagcttgcaactgttatgggttcacagcgtgagtttgtaagtata
atctaccaaaacaacgataaactgcttttgcctgttgaaaatctaaatatgatagataga
tatattgcaagtggtgttgcaattttggataggctaggcaagggtagctttgcaaaaatc
aaagaaaaagtaagagccaaactttttgccatagcttcaaagattattgaaattgctgca
aaaagagagttggttgaaggtaagataataaaatcagactttgtagaatactctaaattt
ttacaagaagcagggtttgaatatacaaaagatcagcaaacttgtgttgatgctatttta
aaagatttaaaaagtggtaaagtaatggatagacttgtaagtggtgatgttggttttgga
aagactgagattgctatgaatgccatttttgcaactgtaaaaagcggttatcaagcacta
ttttttgttccaacaacacttctttcatcacaacattatcaaagtttagttaagagattt
gaagattttaatatacctgtttttagacttgatagatttaccacaactgctggaaaaaat
gctttaaaaaaagctctttttgacaaagtacctttagtttgcgttggaacacattctctt
ttaaatttacaagctaataatatcggtcttatagtgatagatgaagagcataaatttggg
gttaagcaaaaagaaaaattaaaagcaatctcagcaaattcacatcttctaagcataagc
gctacaccaattcctagaagtttaaatatggcacttagctcaattaaaagttatagcaca
cttgcaaccccaccaagtgacagattagatgttagaactttggttaaagagtgggatgaa
aaagttataaaagaggccatttctagggaattaagaagaggcgggcaggtattttatgtc
cataatagaatttcaaccatagatgaggttaaaaaatctctacttagaatttttccaaat
ttaaaaattttaattttacactctcaaattgatatgaaaacaacagagcttgaagttgaa
aagtttttaaataaagagtatgacttaatgctttgcactagcattgtcgagagtggaatt
catatgccaaatgcaaacacgataataatagaaaatgcaaacaactttggaattgccgat
cttcatcagcttcgcggaagggttggaagaagtgataaacaggggtattgttattattta
attgaagataaaaacacattaacacaagactctttaaagagactagtagcacttgaaaac
aactcatttttgggttctggctctgtgcttgcttaccatgatttagaaattcgtggcggt
ggaaatttagttggtgaagctcaaagtggacatatagaggctattggatatagtctttat
ctaaaaatgcttgaagatgagataaatgcacttttaaacaaaaaggcaaaagttttaagt
agtgttgatatgaaacttagtataaatgcctttttaaatagcgaatatattaaagaagat
agaattagattagagctttatagaagacttagtaaggcaaatgaggttaatgaaatttat
gaaattagtggcgaaatggaagataggtttggaaaacctgatgtttatactaaacaattt
ttagatattatgcttataaaaataatggcaaataagctaaatataaaatcaatctctaat
tatgaaatgaatatctcatatgtaaaatttgatgatagcaaggttgttttaaaatcaaga
agcaaagatgatgatgacataatagatacgcttttatcacatcttagaaaggagcttaaa
agtggattggtctaa
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