Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_00245
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Entry
IPM89_00245 CDS
T10208
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbly03021
]
IPM89_00245 (rpoH)
Transcription machinery [BR:
cbly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IPM89_00245 (rpoH)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QQS54348
LinkDB
All DBs
Position
complement(47243..48118)
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AA seq
291 aa
AA seq
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MTTTALVPRMQNLPVPVDSLESYIQAVSQVPMLSAEEEQELTQRLRLRNDLEAAQHLIVA
HLRFVVHIARGYLGYGLPLGDLIQEGNIGLMKAVRRFDPAHGVRLVSFAVHWIRAEIHEF
VLRNWRIVKIATTKAQRKLFFKLRGSKKRLGWLNNEEVNTVARELGVSPDNVLEMESRLS
GHDVSFDPAPEADGNDETDSYAPSAYLRDEQADPSETLEREDWEDQTVSRLGAALERLDP
RSRDIVQRRWLNDNKPTLHELAAEYQVSAERIRQLETNAMKKLRAALPVAA
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgaccgcactggttcctcgcatgcaaaatctgccggtaccggtcgacagtctg
gagagctacatccaggcggtcagccaggtgccgatgttaagcgccgaggaagaacaggag
ctgactcagcgtttgcggctgcgtaacgacctggaagcggcgcaacacttgatcgtggcg
catctgcgctttgtggtgcatatcgcgcgcggctacctggggtacggtctgccgctgggc
gatctgatccaggaaggcaacatcggcctgatgaaagcggtcaggcgtttcgatccggcg
cacggtgtgcggctggtctcgttcgccgtgcattggatccgggcggaaatccacgaattt
gtcctgcgcaactggcgcatcgtcaagattgccaccaccaaggcccagcgcaagctgttt
ttcaagttgcgtggctccaagaagcggctgggctggctgaacaacgaggaagtgaacacg
gtcgcccgcgaattgggcgtcagccccgacaacgtgctggagatggaatcgcgtctgagc
ggtcacgatgtctcgttcgacccggcaccggaagccgatgggaacgacgagaccgacagc
tatgccccttcggcctacctgcgcgacgagcaggccgatccatcggagacgctggaacga
gaggactgggaagatcaaaccgtcagccgactcggcgcggcgctggagcggctggacccg
cgcagccgggacatcgtgcaacgccgctggttgaacgacaacaaaccgaccctgcacgag
ctggcggcggaataccaggtatcggccgagcgcatccgccagttggaaaccaatgccatg
aagaaattgcgggccgcgctgccggtggcggcctga
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