Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_04625
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Entry
IPM89_04625 CDS
T10208
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPM89_04625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbly03019
]
IPM89_04625
03009 Ribosome biogenesis [BR:
cbly03009
]
IPM89_04625
Enzymes [BR:
cbly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IPM89_04625
Messenger RNA biogenesis [BR:
cbly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IPM89_04625
Ribosome biogenesis [BR:
cbly03009
]
Prokaryotic type
rRNA helicases
IPM89_04625
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Flavi_DEAD
HelD_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQS55109
LinkDB
All DBs
Position
1022497..1024284
Genome browser
AA seq
595 aa
AA seq
DB search
MSSPITQFEQLALSPPLLQRLQELGYEAPSPIQAATIPHLLDGHDLLGQAQTGTGKTAAF
ALPILQKLDLAERRPQALVLAPTRELAIQVAEAFQGYAHHLPGFHVLPIYGGQSMSNQLR
QLKRGAHVVVGTPGRIMDHLRRESLVLEGLRTLVLDEADEMLRMGFIEDVDWILEHTPPQ
RQIALFSATMPEQIRRVAHRHLRDPREVKIQTSTATVISVRQRYWQVSGLHKLDALTRIL
EVEDVDAVLVFVRTKVAATELAERLEARGHACAALQGDMSQVLRERTIEQLKNGGLDIVV
ATDVAARGLDVPRISHVVNYDIPYDTEAYIHRIGRTGRAGRSGNAILFVAPREMRMLRAI
EKATRQPIESMPLPTRKVIAAHRLTQFKQQILDVLAAEDLDFFHGVVAQLEKEQEISPND
IAAALTYLAQRDRPLRVEEAADPAEAANARVRSEAEEPARSDKPRKRSRESADADLVRYR
LEVGHQHGATPQNIVGAIANEAGIESRYIGRIQIHDDYSTVDLPDGMPTDIFQHLKKVRV
RQCMLNISRLDAAEPERRRPASRTSGSREKPFREGQDKPAERKPRKKSPDHHQNS
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcccccattacccaattcgaacaactggcactttccccgccgttgctgcaaaga
ctgcaagaactcggctacgaagccccttcgccgattcaggcggccaccattccccacctg
ctggacggccacgacctgttgggccaggcgcaaaccggcaccggcaagaccgccgccttt
gccctgccgatattgcaaaaactggatctggccgagcggcgaccgcaggcgttggtgctg
gcgcccacccgcgagctggccattcaggtcgccgaagccttccagggctatgcccaccat
ctgcccggctttcatgtgttgcccatctatggtggtcagagcatgagcaaccagctccgc
cagctcaagcgcggggcgcatgtggtggtcggcacgccgggccgcatcatggatcacctg
cgccgggagagtctggtgctcgaaggcttgcgtaccctggtgctggacgaggccgatgaa
atgctgcggatgggcttcatcgaggatgtggactggatcctcgaacacacgccgccgcag
cggcagatcgccctgttctcggccaccatgcccgagcagatccgccgggtggcgcaccgc
catctacgcgatccgcgggaagtgaagattcagaccagtaccgccaccgtcatctcggtc
cggcagcgctattggcaggtcagcggcctgcataagctcgacgccctgacccgcatcctg
gaggtggaggatgtcgacgcggtgctggtgttcgtgcgcaccaaggtcgccgccaccgaa
ctggcggagcggctggaagcgcgtggccacgcctgcgccgccctgcagggtgacatgagc
caggtgttgcgcgagcgcaccatcgaacagctcaagaatggcggcctcgatatcgtcgtc
gccaccgacgtggcggcgcgtgggctcgacgtgccgcgcatcagccacgtcgtcaattac
gacattccctacgacaccgaagcctatattcatcgcatcggccgcaccggccgcgccggt
cgttcgggcaatgccattctcttcgtcgcgccgcgcgagatgcggatgctgcgggctatc
gaaaaggcgacccgtcagcccatcgaatcgatgccgttgccgactcgaaaagtgattgcg
gcccatcgcctgactcagttcaagcagcagatcctggacgtgctcgccgcggaagatctg
gactttttccacggtgtggtcgcccaactggaaaaggagcaggagatcagcccgaacgac
atcgccgcggcgttgacctatctggctcagcgcgaccgcccgttgcgggtcgaggaagcc
gccgatccggcggaggccgccaacgcccgtgtccggtcagaggcggaagagccggcgaga
tccgacaaaccgcgcaaacgttcgagagaatccgccgatgccgatctggtgcgctaccgg
ctcgaagtcggccaccagcacggcgcgaccccgcagaatatcgttggcgccatcgccaac
gaggcggggatcgaaagccgctatatcggtcgtatccagatccacgacgactacagcacg
gtggatctgcccgacggcatgcccaccgatatcttccaacatctcaagaaagtccgggtg
cggcagtgtatgttgaacatcagccgcctcgatgcagccgaaccggaacgaagacggccg
gcttccagaacctcgggttctcgggaaaaaccgtttagggaaggccaagacaaaccggcc
gagcgcaaacccagaaagaaaagtcccgatcaccatcagaattcgtga
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