Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_05505
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Entry
IPM89_05505 CDS
T10208
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IPM89_05505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbly03021
]
IPM89_05505
Transcription machinery [BR:
cbly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IPM89_05505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r4
Ank_2
Ank_5
Sigma70_r1_2
Ank_4
Ank
Motif
Other DBs
NCBI-ProteinID:
QQS55265
LinkDB
All DBs
Position
1214903..1217185
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AA seq
760 aa
AA seq
DB search
MNPLLKMAIRAGALDLVRFHLQRGGDINRQDDSGTSLLMFAAVRGRAEICQILVDAGADP
VLKNRQGQDALDLAGIAGHGTVEAILRAAAATRVPDPDSQAVNDKTVIEDLTDSFADALD
FDAMAWEAEIETPPPEGDLDCLDSTRVLHQIISHHVPVDTDADWSDIEIDLPNLPTSRRD
RVWAERWASITPVLIQGLQVGRVSRADIEYALQHDQPDLEMQELLLNRILGELGIQIDDW
VDDDLPPDFAPLDPEQENPEEPIIDEALSFIESWLDQRMEPVGCYLRDLGDFDLLTAEEE
IQVARCIEESVSQVLLVLADYPLTISELLRLYDLACENGSLLTEVISGFKDVEDVAPPLL
DVELLLAADDQDAVVAGDKAAAFDNEDEDEDEDSTSSAAENTLDPEEIARHFTELRSLYQ
QTLSSIDKVGLLNPRAQALRQQLSECFLQFRIAPKTLNRLIAQVYGMAKRIHALETRNPD
RNGPHLQQERGAIERETHLPIEFIEDLNYRLSSSDAKVRHARHEMTTANLRLVISIAKKY
THRGLDFLDLIQEGNIGLMKAVDKFDYQRGYKFSTYATWWIRQAITRAIADQARTIRIPV
HMIETINKLDWISRQMWQEAGREPTPEELSIRMEIPEDRVRKVMKVVEEPISLEALMDDG
EGDESFADRLEDLQAVSPEQAAINDNLEENIRRLLDDFKPRDAEVIRLRFGIDRPFAQTL
EEIGQQFDVTRERIRQIEAKALKKLAHPNRSDLLRDFLSP
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaatccacttctcaagatggctattcgcgctggtgcattggatttggttcgatttcat
ctccagcgcggcggcgatatcaaccggcaggatgacagcggtacttcgctgctaatgttc
gctgccgtccgtggccgtgcggaaatctgccagattctggtggatgctggagccgatcca
gttctgaaaaaccgtcagggccaagatgcactggatctggctggcattgccggccatggc
acagtggaagccatactacgggccgctgctgctacccgcgtaccggatcccgatagtcag
gctgtcaatgataaaactgtgattgaagatctgacggattcctttgccgatgcgctggat
tttgacgctatggcctgggaagcagagatcgaaacgccgccgccagaaggcgatctcgac
tgccttgacagcacccgtgtccttcaccagatcatatcccatcacgttcccgtcgatact
gacgcggactggtcggatattgagatcgacctgccgaacctgcccacgagccggcgtgat
cgagtgtgggccgagcgctgggcaagcatcaccccggttttgattcaaggtctccaagtc
gggagagtttcccgcgctgacatcgaatacgcactacagcatgaccaacccgatctggaa
atgcaggagctattgctgaatcgtattctcggagaactgggcattcaaattgacgactgg
gtggatgatgatttgccgcctgacttcgctcctctggatcctgaacaggagaatccagag
gagccgatcatcgatgaagcgctgtcctttattgaatcatggctggatcagcgcatggag
cctgttggttgctatctacgtgatcttggtgactttgatttgctgacggctgaagaagaa
attcaggttgcccggtgcattgaggaaagcgtcagccaagtgctgctggttctggctgat
tatccgctgaccattagcgaactgctgcgactttatgatttggcctgtgagaatggtagt
ctgctgaccgaagtaatcagtggtttcaaggatgtcgaagacgttgcgccgcccttgctg
gacgttgaattgctgctggccgctgatgaccaggatgcggtggtcgctggtgacaaggcg
gcagccttcgataacgaagacgaggatgaggacgaagacagcacatcatctgctgctgaa
aacaccctcgatcctgaggaaatcgcccgtcacttcacagaattgcgctccctgtaccag
cagaccctttccagcattgataaagtcggtctcctgaaccctcgggcacaggcactgcgc
cagcaattaagcgagtgtttcctgcaattccgcattgcgccgaagacgctgaatcggttg
attgcccaagtgtatggcatggctaaacgcattcatgccttggagacgcgcaacccggat
cggaacggcccgcacctacagcaggaacggggggccattgaacgggaaacccatcttccg
attgaattcatcgaagatctcaattatcgactgtcaagcagcgatgccaaagtccgccac
gcccggcatgaaatgactacggccaatttgcgactggtgatttccatcgccaagaagtac
acccatcggggcttggactttctcgacctgattcaggaaggcaatattggcttgatgaag
gcagtggataaattcgattaccagcgcggctataaattctcgacctatgcgacgtggtgg
attcggcaggccattacccgcgccattgctgatcaggcccgcaccatccgcattccggtc
cacatgattgagaccattaacaaactggactggatttcccggcagatgtggcaggaggct
ggacgagaacctaccccagaggagctatccatacggatggagatacccgaagaccgggtg
cgtaaggtgatgaaggtcgttgaggaaccgatttcgctggaagcgctgatggatgatggc
gagggcgatgaaagttttgctgatcggctggaagacttgcaggccgtatcgccggaacag
gcagcgatcaacgacaacctggaagaaaacattcgccgactgctggatgatttcaagcca
cgggatgctgaagtcatccgcctgcgctttggaatcgatagaccgtttgcacaaaccctt
gaagaaatcggccagcagtttgatgtgacccgcgaacgtatccgccagatcgaagccaaa
gcgctaaaaaagctggctcatcccaatcgttcagacctgttgcgtgatttcctgtcgcca
tga
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