Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_06755
Help
Entry
IPM89_06755 CDS
T10208
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cbly03009
]
IPM89_06755 (rlmD)
Enzymes [BR:
cbly01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IPM89_06755 (rlmD)
Ribosome biogenesis [BR:
cbly03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IPM89_06755 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Cons_hypoth95
TRAM
PCMT
Methyltransf_ANTKMT
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_11
Methyltransf_15
Methyltr_RsmB-F
PabTrmU54_TRAM_dom
PrmA
Methyltransf_23
UPF0020
N6_N4_Mtase
2CSK_N
BpsA_C
Motif
Other DBs
NCBI-ProteinID:
QQS55485
LinkDB
All DBs
Position
complement(1512831..1514156)
Genome browser
AA seq
441 aa
AA seq
DB search
MAKKAKIPVEPFVVGVDDLAHEGQGVARRDGKAVFVEGALPGEEVRCVYTARRSRRDEAR
AVEVLHASPERVEPLCAHFGVCGGCALQHLQPSGQLAVKQRWLLDGLTHIGKLQPEQVLE
PMTGPLWGYRRRARLTVKYVAKKGRTLVGFRERHSPFVADLRRCEVLDERVGSRLEELAQ
LIDSLSIRDRLPQIEVAGGDETTGLNFRVLVPPSEEDRARLQAFGERHGFALYLQPGGPD
SVRALWPEQPELSYRLPDFDLDLEFQPWHFIQINAAINRQLVGRACELLQIGPEDRVLDL
FCGLGNFTLALARRAREVVGVEGDASLVEWARRNAARNGVANATFHAADLAGDLNDQLWA
RGGYDRILLDPPRSGALEMMPRVAALGARRVVYVSCHPATLARDVGELAHRHGYRLESAG
VLDMFPHTAHVESVAVLARRT
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaaagcaaaaattccggtggaaccgtttgtggtcggcgtcgatgacctggcg
catgaaggtcagggtgtcgcacggcgggatggcaaagcggtatttgtcgagggggcgctg
ccgggtgaggaagtccgctgcgtttacaccgcccgccggagtcgccgcgacgaagcgcgt
gccgtggaagtgctgcacgcctcaccggaacgggtcgagccgctctgcgcgcatttcggg
gtctgtggcggctgcgccctgcagcatttgcagccgtctggccagcttgccgtcaagcag
cgctggctgctggatggcctgacccacatcggcaagctccagccggaacaggtgctggaa
cccatgactgggccgctatggggttaccggcggcgggcgcggctgacggtgaaatacgtt
gccaagaaggggcgcaccctggtgggttttcgcgagcggcacagtccattcgtggccgac
ctgcgccgctgcgaggtgctggacgagcgggtgggtagccggttggaggaactggcgcaa
ctcatcgatagcctgtccatccgcgaccgtttgccccagatcgaggtggctggcggcgat
gaaacgacagggctgaatttccgggtgttggtgccgccgagcgaggaagatcgggcgcga
ctccaggcgttcggcgagcggcacggctttgcgctctacctgcaaccgggtgggccggac
agtgtgcgggcattgtggccggagcagccggaactcagctatcgcctgccggatttcgat
ctcgatctggaatttcagccctggcactttattcagatcaacgccgccatcaaccggcaa
ctggtcgggcgggcatgtgagctgctgcaaatcggtccggaagatcgagtgctggatttg
ttttgtgggctgggtaacttcaccctggcgctggcccgccgggcgcgagaggtggtcggc
gtggaaggcgacgccagcctggtggagtgggcgcggcgcaatgccgcgcgtaatggtgtt
gcgaacgccacttttcacgccgccgatctggccggtgacttgaacgatcagctttgggca
cggggcggttatgatcggatcttgcttgatcccccccgttccggcgcgctggagatgatg
ccgcgcgtggccgcgctgggcgcgcggcgggtggtatatgtgtcctgccatccggccacg
ctggcgcgggatgtcggcgagttggcgcaccgccacggttaccgattggaaagcgctggg
gtgctggatatgttccctcacaccgcgcatgtcgagtcggtggcggttttggcccgccgg
acgtag
DBGET
integrated database retrieval system
