Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_07005
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Entry
IPM89_07005 CDS
T10208
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IPM89_07005 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbly03021
]
IPM89_07005 (rpoB)
03400 DNA repair and recombination proteins [BR:
cbly03400
]
IPM89_07005 (rpoB)
Enzymes [BR:
cbly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IPM89_07005 (rpoB)
Transcription machinery [BR:
cbly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IPM89_07005 (rpoB)
DNA repair and recombination proteins [BR:
cbly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IPM89_07005 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
ATG14
ATPase_RavA_C
Motif
Other DBs
NCBI-ProteinID:
QQS55526
LinkDB
All DBs
Position
1566085..1570248
Genome browser
AA seq
1387 aa
AA seq
DB search
MAYTFTEKRRIRKDFGKRPSILEVPYLLAIQLDSYREFLQAEVPPGERQVAGLHAAFRSV
FPIVSYSGNARLEYVSYRLGEPVFDVRECQLRGLTYAAPLRVRLRLVLMDKDAEAGTHKI
KDIKENEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFSA
RVIPYRGSWLDFEFDVKDIVYARIDRRRKLPVTILLRALFDEPNPNDRNAISVNERILGL
FFDTNTVRIEDDQFNLDLVPERLQGETAGFDIMIGDRVLLKAGERVKAKHVRDLDKAGVR
RLRVPGEYLVGKILAHDLRDPETGEQLAQANDELTPDKLEKIQASGIAEFQTLYVNEVNR
GPYLSNTLRADQTRSQWDAQVEIYRMMRPGEPPTKDAAQRLLHDLFFSAERYDLSDVGRM
KFDSRVSHRRTPIPDVPTKERPPGVLSMEDILAVLKVLIDIRNGNGQVDDIDHLGNRRIR
CVGEMTENVFRIGLVRVERAVKERLSLAESEGLTPQDLINAKPVGAAIKEFFGSSQLSQF
MDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINS
LAVYARTNAYGFLETPYRRAVDGRVTDQIDYLSAIEEGQYVIAQANAPLDPDGQLTDDLV
SCRHLNEFTLTAPDKVQYMDVSPKQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLR
AEKPLVGTGMERIVARDSGVCVIARRGGRVDSVDAGRIVVRVNDAETEAGEPGVDIYNLT
KYTRSNQNTCINQRPLVHVDDNVARGDVLADGPSTDMGELALGQNLLVAFMPWNGYNFED
SILISERVVQEDRFTTIHIEELSCVARDTKLGPEEITADIPNVGESALARLDEAGIVYIG
AEVKAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVRVF
TRDGVEKDSRAQQIEEAELKRIRKDLNDQMRILEDDLYQRMERMLVGQTTEGGPNGLYGG
ATITLEYLSTLRREQWFHIRMQAEELNEQLEKINRQLDQQRKDFDQKFEEKRRKLTQGDD
LAPGVLKMVKVYLAVKRRVQPGDKMAGRHGNKGVVSMIVPQEDMPYLEDGTPVDIVLNPL
GVPSRMNVGQVLETHLGWAAKGLGLKIGRLLDAQAQLADLRSLLDQIYNQVGGQSVDLQQ
FDDTEVVALCRNLRGGVPIATPVFDGATEEEMRELLRLAGLSENGQSTLYDGRTGDPFDR
PVTVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA
SYTLQEMLTVKSDDVNGRTKVYKNIVDGNHRMEAGMPESFNVLVKEIRSLSINIELESDV
TPPARNE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcctacacttttactgaaaagagacgtatccgtaaagacttcggcaaacgccccagc
attctcgaagtgccctacctgctggcgatccaactcgattcgtaccgcgagttcctgcaa
gccgaggtaccgccgggagaacgccaggtagcgggattacacgccgcttttcgctcggta
ttccccatcgtcagctactcgggcaatgcgcggctggagtatgtcagctatcggctgggc
gagccggtgttcgacgtccgcgaatgccagttgcgcggactgacctacgccgcgccgttg
cgagtgcggctgcggctggtgctgatggacaaggacgccgaggccggcacccataagatc
aaggacatcaaggaaaacgaagtctacatgggcgaactgccgttgatgaccgacaacggt
accttcgtcattaatggcaccgaacgggttatcgtctcgcagctgcaccgctcgcccggc
gtgttcttcgatcacgacaagggcaagacccattcctccggcaagctgctgttctcggcg
cgcgtcatcccctaccgcggctcctggctggatttcgaattcgacgtcaaggacatcgtg
tacgcgcgcatcgaccgccgccgcaagctaccggtcaccatcctgttgcgagcgctgttc
gacgagcccaatccgaacgaccgcaacgccatcagcgtcaacgaacggattctcggcctc
ttcttcgacaccaacacggtccggatcgaagacgatcagttcaacctggatctggtgccg
gagcgtctgcaaggcgaaaccgccggcttcgacatcatgatcggagatcgggtgctgctc
aaggcgggcgagcgcgtcaaggccaagcacgttcgcgacctggataaagctggagtgcgg
cgcttgcgggtaccgggcgaatatctggtcggcaagattctggcccacgacctgcgcgat
ccggaaaccggcgagcaactggcgcaggccaacgacgaattgacgccggacaagctggaa
aagatccaagccagcggcatcgccgaattccagaccttgtacgtcaacgaagtcaatcgc
ggcccgtacctgtccaacaccctgcgcgccgaccagacccgcagccagtgggacgctcag
gtggaaatctatcggatgatgcgccctggcgaaccgccgaccaaggacgccgctcaacgc
ctgttacacgatttgttcttctcggccgagcgctacgatctatccgatgttggccgcatg
aaattcgacagcagggtcagccatcggcggacgcccattccggacgtgccgaccaaggag
cgcccacccggcgtactgtccatggaggacatcctggccgtgctcaaggtgctgatcgac
atccgcaacggcaacggccaggtcgatgacatcgaccacctcggcaaccgccgcatccgc
tgcgtcggcgagatgaccgaaaacgtgttccgcatcgggctggtccgggtcgagcgcgcg
gtcaaggagcggctgagcctggctgagtccgaaggactgaccccgcaggatctgatcaac
gccaaaccggtcggcgccgccatcaaggaattcttcggttcttcgcaactgtcgcagttc
atggaccagaacaatcccttgtccgaagtcacccacaaacgccgggtgtcggcgctgggg
cccggcggtctgacccgcgaacgggccggattcgaggtgcgcgacgtgcacgccacccac
tacggccgggtctgtccgatcgaaaccccggaaggtccgaacatcggcctgatcaactcg
ctggcggtctatgcccgtaccaacgcctacggcttcctggaaacgccctaccggcgggcg
gtggatggccgcgtcaccgatcagatcgattatttgtcggccatcgaggaaggccagtat
gtcattgcgcaagccaacgctccgctcgatcccgacgggcagctgaccgacgacctggtc
tcctgccgtcatctgaacgaattcaccctgaccgctccggacaaggtgcaatacatggac
gtgtcgcccaagcaaatcgtctcggtggcggcggcgctgatcccgttcctggagcacgac
gacgccaaccgcgcgctgatgggctccaacatgcaacgtcaggccgtgccgaccctacgc
gccgaaaagccgctggtcggcaccggcatggaacggatcgtggctcgcgattccggcgtg
tgcgtgatcgcccgccgcggcgggcgggtggattcggtggacgccggccgcatcgtggtg
cgggtcaacgatgccgaaaccgaagccggcgaaccgggcgtggatatctacaacctgacc
aagtacacccgatccaatcagaacacctgcatcaatcagcgaccgctggtccacgtcgat
gacaacgtggcgcgcggtgacgtgctggccgacggcccgtccaccgatatgggcgaactg
gcgctgggccagaacctgctggtcgccttcatgccctggaatggctacaacttcgaagat
tcgatcctgatctccgagcgggtggtgcaggaagaccgcttcaccaccatccatatcgag
gaactgtcctgcgtcgcccgcgacaccaagctggggcccgaggagatcaccgccgatatc
cccaacgtcggcgaaagcgcgctggcacggctggacgaagccggcatcgtctatatcggc
gccgaggtcaaggccggcgacatcctggtcggcaaggtcacgcccaagggcgagacccaa
ttgaccccggaagaaaaattgttacgggcgatcttcggcgagaaggcttcggacgtaaag
gacacctcgctgcgcgtgccttcgggcatggacggcacggtgatcgacgtccgggtattc
acgcgcgacggggtggaaaaggattcccgtgcccagcagatcgaggaagcggaactgaaa
cggatccgcaaggatttgaacgaccagatgcggatcctggaggacgatctgtatcagcgc
atggagcggatgctggtcggccaaacgaccgagggtggacccaatggcctgtacggtggt
gcgaccatcacgctcgagtatctgagcaccctgcggcgcgagcagtggtttcacatccgc
atgcaagccgaggagttgaacgagcaactggaaaagatcaaccggcaactggaccagcag
cgcaaggatttcgaccagaagttcgaggaaaaacgccgcaagctgacccagggcgatgat
ttggccccgggcgtgctcaagatggtcaaggtctacctggcggtcaaacgccgcgtccag
ccgggagacaagatggctggccgtcacggcaacaagggcgtggtgtcgatgatcgtgccg
caggaagacatgccttatctggaagatggcacaccggtcgatatcgtgctgaacccgctg
ggggtaccctcgcgaatgaacgtcggtcaggtgctggaaacccatctgggctgggccgcc
aaaggtctgggcctcaagatcggccgcctgctggacgcgcaagcacaactcgctgacctg
cgctcgctcctggatcagatttacaaccaggtcggcgggcaaagcgtcgatttgcaacag
ttcgacgacacggaagtggtagcgctgtgccgtaatctgcgtggcggcgtgccgatcgcc
acgccggtgttcgatggcgccaccgaagaggaaatgcgtgaattactgcgactggcgggg
ctctcggaaaacggtcagagcaccctgtacgatggtcgcaccggcgatccattcgaccgc
ccggtgacggtcggctatatgtacatgctcaagctgaaccacctggtggacgacaagatg
catgcccgttccaccggtccctacagcctggtcacgcagcagccgctgggcggcaaggcg
caattcggcggccagcgcttcggcgagatggaagtctgggcactggaagcctacggcgcg
tcctataccttgcaggaaatgctgacggtgaaatcggacgacgtcaacggccgcaccaag
gtctacaagaacatcgtggacggtaaccaccggatggaagccggcatgcctgaatcgttc
aatgtgctggtcaaggaaatccgttccctgagtatcaatatcgagctggaaagcgatgtg
acgccgccggcgcgcaacgagtga
DBGET
integrated database retrieval system
