Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_08455
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Entry
IPM89_08455 CDS
T10208
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Brite
Enzymes [BR:
cbly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IPM89_08455 (hrpA)
Messenger RNA biogenesis [BR:
cbly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IPM89_08455 (hrpA)
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Ortholog
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GFIT
Other DBs
NCBI-ProteinID:
QQS55847
LinkDB
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Position
complement(1907949..1911830)
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AA seq
1293 aa
AA seq
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MIVENDLAALRSRLADCPTRDRVVLDRRLRDLRRRAREGQSLERGLEQWLADLESAAARL
RERRAALPTPNFDDALPINAQRERIAAAVRAHQVVVVCGETGSGKTTQLPKICLSLGLGA
AGLIGHTQPRRIAARSVAGRIAAELGTSVGGQVGYKVRFSDRTGPDALIKLMTDGILLAE
TQSDRRLDQYEVIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKLIITSATIDPERFSHHF
GDAPIIEVSGRTWPVELRYRPLSAADEDERDRDLQQAILDAVDEIWQQGPGDILVFLSGE
REIRETAESLRKHHPPNTEILPLYARLSAAEQNRVFQPHGRPRIVLATNVAETSLTVPGI
RYVIDPGTARISRYSPRSRIQRLPVEKISQASANQRAGRCGRVMAGVCVRLYAEEDLQSR
PRFTDPEILRTHLAAVILQMSALNLGRPEDFPFVEPPDSRQISDGFRLLFELGAVDEQRN
IATLGRQLAKLPVDPRLGRMLLAAQGESCLREVLVIVAALAIQDPRERPLEKQQAADEKH
RRFRDEQSDFLSLLKLWDYYHEQAHQLSKNQLRNRCQAEFLSFVRMREWHDLHQELLGRV
TEMGMRLNSEPAPYDGLHRALLSGLLGHLGLKQEEHAYLGARGRNFYLFPGSGLFKKRPR
WVMAAEVVETSRLFARTVARIEPEWVERLAGPLLKRSYAEPHWEKRSAQVTATERVTLYG
LPVVVGRRVNYGPLDPVLARELFIRHALVEGEFHCKAPFFQHNRQLLAELEELEVRARRD
LTADEEALHRFYDEIIPAGIYSGPSFETWRKRAERDQPRLLFLDRAALLAAAGPVADGER
FPDHLDLDGLKLPLSYRFTPGADDDGVTLTVPLAAVNQVDPRRLDWLVPGLRAERMAALL
KSLPKALRRHFVPVPNYAGALLEAIVPDARSLVEAMTEQLQRMTGVRVPEEAWHPEAVPG
HLRMRFRVVDAEGLELAIGRDWAAIQRQLRGEARAGFAALPTPEFERERLRDWDFGELPE
EVSFVRNGIQLRGYPALVAEADGSLSLRVLDSPARAEMATRAGLRRLIGWRLGPVFKTLA
RDLPQFQRMTLHFVGLGTQETLREDLLNAILDRAFLADGPLPRDRAAFEALLERGRTRLS
AVRGEIGEMAAAILAAYHEVRRALSDEPVWAEAMADIRDQLAHLIYPGFLGRTPPEWLPH
LPRYLRAIALRVQKLRQAPDKDRQRRGDIMRLWEGCKRQLERDAGRERYDAELIRFRWLL
EELRVSQFAQELKTVAPVSLKRLEEQWSRVRRG
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
attatcgtggaaaatgatctcgccgccttgcgctcccgcctggccgattgcccgactcgc
gaccgcgtcgtgttggaccgtcgcctgcgggatttgcgccgccgggcgcgcgaaggccag
tcgctggaacgcggtttggagcagtggctcgccgatctggagagcgccgccgcccgcctg
cgcgagcgccgcgccgcgctgccgacgccgaatttcgacgacgcgctgccgatcaacgcc
cagcgcgagcgcatcgccgccgccgtgcgcgcgcatcaagtcgtggtggtctgcggcgaa
accggttcgggcaagaccactcagttaccgaaaatctgcctctcgctcggattgggcgcg
gccgggctgatcgggcacacccagccgcgccggatcgccgcccgctcggtggcggggcgg
atcgccgccgaactgggtacttcggtcggtggccaggtcggttacaaggtgcgtttttcc
gaccggaccgggccggacgcgctgatcaaactgatgactgacggcatcctgctggcggaa
acgcaaagcgaccggcggctcgatcagtacgaagtcatcatcatcgacgaggcccacgag
cgcagcctgaatatcgatttcctgctgggctatctcaagcgattattgccgcgccggccc
gatctgaaactcatcatcacctcggcgaccattgatcccgaacgcttctcccaccatttc
ggcgacgcgccgatcatcgaagtctccgggcgcacctggccggtggagctgcgttatcga
cccttgtcggcggcggacgaggacgagcgcgaccgcgatttgcaacaggcgatcctggac
gcggtggacgaaatctggcaacaggggccgggcgatatcctggtgttcctgtccggcgag
cgggaaatccgcgagaccgccgagagcctgcgcaagcaccatccgcccaataccgagatt
ctgccgctgtacgcccggctttcggccgccgaacagaaccgggtgttccagccgcacggc
cggccgcgcatcgtgctggccaccaacgtcgccgaaacttcattgaccgtgcccggcatc
cgctacgtgatcgatcccggcacggcgcgcatcagccgctacagcccgcgcagccggatt
cagcggttgccggtggagaagatttcccaggccagcgccaaccagcgcgccggccgctgc
gggcgggtgatggcgggtgtctgcgtccggctgtacgcggaagaggatttgcagagccgc
ccccgcttcaccgacccggaaatcctgcgcacccatctggcggcggtgatcttgcagatg
agcgcgctgaatctggggcggccggaggatttcccgttcgtggagccgccggactcgcgc
cagatcagcgacggttttcggctgctgttcgaactgggggcggtggacgagcagcggaat
atcgccacactgggccggcaactggcgaaactgccggtcgatccgcgcctggggcggatg
ctgctggcggcgcaaggcgagagttgtctgcgcgaagtgctggtgatcgtcgcggcgctg
gcgattcaggacccacgcgagcgaccgctggaaaagcagcaagcggcggatgagaagcat
cgccgctttcgcgatgaacagtccgattttttgtccttgctcaagttgtgggactactac
cacgagcaggcccatcagctttccaagaaccaattgcgcaaccgttgccaagccgagttt
ctgtctttcgtgcgaatgcgggaatggcacgatctgcatcaggaattgctgggacgggtg
accgaaatggggatgcggctgaacagcgagccggcgccctatgacggcctgcaccgcgcc
ttgttgagcggcctgctcggtcatctgggcctgaagcaggaggaacatgcctacctcggc
gcgcgcggtcgcaatttttacctgttccccggttccgggctgttcaagaagcggccacgc
tgggtgatggcggcggaggtggtggaaaccagccggctgtttgcccgcaccgtggcgcgc
atcgagccggaatgggtggaacgcctggccgggccgttgctcaagcgcagctatgccgag
ccgcattgggagaaacgctccgcccaggtgactgccaccgagcgggtcacgctgtacggc
ctgccggtggtcgttggccgacgcgtcaattacgggccgctcgatccggtgctggcgcgc
gagcttttcattcgtcacgccctggtcgagggcgagtttcactgcaaggcgcccttcttc
cagcacaatcggcaactgctggcggaattggaggaattggaagtccgcgcccgccgcgat
ctgacggccgacgaggaggcgctccaccgcttttacgacgagatcatccccgcaggcatt
tatagcggcccgtcattcgagacctggcgcaagcgggccgagcgggatcagccccgattg
ctgtttctcgaccgggcggccttgctggcggcggcgggaccggtggcggatggcgagcgc
tttcccgatcatctcgatctggacggcttgaagctgccgctgagctaccgttttaccccc
ggcgcggacgacgacggcgtgacgctgaccgtgccgctggcggcggtcaatcaggtggac
cccaggcggctggactggttggtgcccggtttgcgggccgagcggatggcggcgctgcta
aagtcgctacccaaggcgctgcggcgtcatttcgtgccggtgcccaactacgcgggggcg
ctgctggaggcgatcgtgccggatgcgcggtcgctggtcgaggccatgaccgagcagttg
cagcgcatgaccggcgtgcgggtgcccgaggaggcgtggcatcccgaagccgttcccggt
catctgcggatgcggtttcgcgtggtggacgccgagggtttggaactggcgatcgggcgc
gactgggcggcgattcagcggcaattgcgtggcgaggcgcgcgccgggttcgcggcgctg
cccaccccggaatttgagcgggagcggctgcgcgactgggatttcggcgagttgccggag
gaggtgagcttcgtccgcaatgggattcaattgcgcggttatccggcgctggtcgcggaa
gccgatggatcgttgtcgctgcgggtgctggattcgccggcgcgggccgagatggcgacg
cgggctggcttgcggcggctgatcggctggcggctgggacccgtgttcaaaaccctggcg
cgcgatctgccgcagtttcagcgcatgaccctgcatttcgtcgggctgggcacgcaggag
actttgcgcgaggatttattgaacgccattctcgaccgggcttttctggctgatgggccg
ctgccgcgcgaccgggcggcgttcgaggcattgctggagcgcggcaggacccggctgagc
gccgtgagaggggagatcggcgaaatggccgccgcgattctggccgcctatcacgaggtc
cggcgggcgctgagcgacgagccggtttgggccgaagcgatggccgacattcgcgatcaa
ctggcgcatttgatctatcccggctttctcggccggaccccgccggagtggctgccgcat
ttgccgcgctatctgcgcgccatcgcgctgcgcgtgcagaagctgcggcaggcgccggac
aaggatcgccagcggcgtggcgacatcatgcgcttatgggagggctgcaagcgacaactg
gagcgggatgccgggcgggaacggtatgacgcggaactgatccgcttccgctggctgttg
gaggaactgcgggtgtcgcagttcgcccaggagttgaagacggtcgcgccggtgtcgctc
aagcgactggaggagcagtggagcagggtgcggcgggggtga
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