Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_08885
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Entry
IPM89_08885 CDS
T10208
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IPM89_08885 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbly03400
]
IPM89_08885 (recD)
Enzymes [BR:
cbly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IPM89_08885 (recD)
DNA repair and recombination proteins [BR:
cbly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IPM89_08885 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
UvrD-helicase
AAA_11
SH3_13
Helicase_RecD
SLFN-g3_helicase
UvrD_C
AAA_22
nSTAND3
AAA_24
AAA_16
AAA_28
ATPase
DEAD
AAA
Herpes_Helicase
Motif
Other DBs
NCBI-ProteinID:
QQS53048
LinkDB
All DBs
Position
complement(1987379..1989313)
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AA seq
644 aa
AA seq
DB search
MKENASLKNALLAPSVGDGEGSALSVLYEQGLLSDLDVHFARFMNRLADGGSPELALAAA
LASHASGQGDICINLRQWARRWSWSAGEEPVEPPPFAPPPANDWLASLRASSVVGRPGER
QPLVLDRRGRLYLYRYWEYERRLADDLPRRSQAASPVADEARLRADLDRLFPRHPQLNGP
DWQKVAAAVAALKQVCVISGGPGTGKTSTVLRILALLAGQAGEQPLRIALAAPTGKAAAR
MQESIRAAKPALDLEAERLAQIPEEASTLHRLLGARPDSVYFRYNRDNPLPLDVLVVDEV
SMVGLALLAKTVDALPAEARLILLGDKDQLASVEAGAVLGDLCAGAGRFSPEFRARLAAL
TGEPLPRGRASSSPLVDAIVLLRHSYRFGVDSGIGALARAVNRGKPAEALALLAGAPHED
IVWRELADPARLPEQLAEPVAAGFAPYLRVVREGAGPVAVFEQFNRFRVLVALRGGPFGV
EALNRLCEAVLSARGLIDTRPTWYAGRPVMVVRNDYNLRLFNGDIGMTLPDPDAPERLKV
FFLGNDGALRSFAPARLPEHETVYAMTVHKSQGSEFERVLVVTPNEPSPVLSRELVYTAL
TRAKQEAMFYGVPEVFAAAVGRRLRRSSGLRDRLWVEPRVGVGR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaaacgccagtttaaagaatgccttgctggctccgagcgtgggcgatggtgaa
ggttcggccctgtcggttctgtacgagcagggcctgttgagcgacctggatgtgcatttc
gcccgcttcatgaaccggctggctgacggaggttcgccggaactggcgctggcggcggcg
ctggccagtcacgccagcgggcagggcgatatctgcatcaacctgcgccaatgggcgcgg
cgctggtcatggagcgccggggaggaaccggtcgaaccgccgccgttcgcgccaccaccg
gccaatgactggctggcgagcttgcgcgccagttcggtggtgggccgtccgggagagcgc
cagccgctggtgctcgaccggcgcggccggttgtacttgtaccgctattgggaatacgaa
cggcggctggccgacgatttgccgcgacggtctcaggcggcgtcgccggtcgcggacgaa
gcacggttgcgcgccgacttggaccggctgtttccgcgtcatccgcaactgaacggtccg
gactggcaaaaggtggcggcggcggtagcggccttgaagcaggtttgcgtgatttccggc
ggacccggtaccggcaagaccagcacggtgttgcgcatcctggcgctgctggccgggcaa
gcgggcgagcagccgttgcgcatcgccctggccgcgccgaccggcaaggcggcggcccgc
atgcaggagtcgatccgcgccgccaaaccggcgctggatctggaggcggaacggctggcg
caaattcccgaagaggcgtccaccctgcaccgtctgctcggcgcccggccggattcggtc
tatttccgctacaaccgcgataacccgttgccgctggatgtgctggtggtggacgaggtg
tcgatggtgggcttggcgctgctggccaagaccgtggatgccctgccggcggaggcgcgc
ctgattctgctgggtgacaaggatcagttggcgtcggtggaagcgggggcggtgctgggc
gatctatgcgccggggccgggcggttctcgccggagttccgggcgcggctggcggcgctg
accggcgagccgctgccgcgcggccgggcgtcttcgtcgccgctggtcgatgccatcgtg
ctgctgcgccacagttatcgcttcggcgtggatagcggcatcggcgcgctggcgcgagcg
gtgaacagaggaaaaccggcggaggcgctggccttgctggcgggcgcgccgcacgaggac
atcgtttggcgggaactggccgatcccgcccgcttgccggagcagttggcggagccggtc
gcggcggggttcgcgccctatctgcgggtggtgcgggaaggggccggaccggtggcggtg
ttcgaacagttcaaccggttccgggtgttggtcgcgctgcgcggcgggccgtttggagtg
gaggcgctgaaccgcttgtgcgaggcggtgttatccgctcgggggctgatcgatactcgc
ccgacctggtacgcgggccggccggtgatggtggtccgcaatgactacaacctgcggctg
tttaatggcgacatcggcatgaccctgccggacccggacgcgccggagcggctgaaggta
tttttcctgggtaacgatggcgcgctgcggagtttcgcaccggcccggttgccggagcac
gagaccgtgtacgcgatgacggtgcataagagccagggttcggagttcgagcgggtgctg
gtggtgaccccgaacgagccgtcgccggtgctgagccgcgaactggtgtatacggctttg
acgcgggcgaagcaggaggcgatgttttacggcgtgcccgaggtattcgcggcggcggtc
gggcggcggttgcggcgctcgtcgggcctgcgggatcggttgtgggtggagccgagggtt
ggtgttggccgatag
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