Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_11520
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Entry
IPM89_11520 CDS
T10208
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IPM89_11520 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbly03021
]
IPM89_11520 (rpoD)
Transcription machinery [BR:
cbly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IPM89_11520 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
V-SNARE_C
DnaD_N
IFT57
CCD97-like_C
Motif
Other DBs
NCBI-ProteinID:
QQS53502
LinkDB
All DBs
Position
2566836..2568776
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AA seq
646 aa
AA seq
DB search
MSEQQQSQLKKLIARGKEKGFLTYAEVNDHLPDDIVDPEQIEDIIAMINDMGIEVHEFVP
DTETLLLNENPASADDDVVAEEAAAALAAVDSEFGRTTDPVRMYMREMGTVELLTREGEI
QIAKRIEEGMGQVLSALANYPLTTSELLRIYDSISDNGTRLSDVISGFQEDEDASSPISE
EEIPLTSDDPDAVVGEDEEEAGEEEASEEEADEEEADEEEADEGEAGEEEAGEEEEQGVV
ESGPDPEETARRFEELRALYHQTQSSADELGLQHLQTQALRQQLGERFLQFRLVPKALDQ
LIANLHEMAERIRSREKEVMHICVGKAQMPRKTFVTSFPQNETRLDWVEEQIQAGKKYSS
LLAAQRDDVLAAQRRLQAIETEVRLSIHEIKDINRHMSIGEAKARRAKKEMVEANLRLVI
SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAKRMEMPEDKVRKVLKIAKEPISME
TPIGDDEDSHLGDFIEDLMVMSPVEAATVEGLRESTREVLSTLTPREAKVLRMRFGIDMP
TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPNRSEQLRSFLDLD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcagcaacagtcgcaattaaagaaattgatcgcccgcggcaaggaaaaaggt
tttctgacctatgccgaggtgaacgaccatctgcccgatgatatcgtcgatcccgaacag
atcgaagacatcatcgcgatgatcaatgacatgggcattgaagtccacgaatttgtgccc
gacaccgagaccttgttgctcaatgagaacccagccagcgccgacgacgatgtggtcgcc
gaggaagccgccgccgcgctggccgccgtggacagcgagttcggccgcaccaccgatccg
gtgcggatgtacatgcgcgagatgggtacggtcgaattgctgacccgcgagggcgaaatt
cagatcgccaagcgcatcgaggaagggatgggccaggtgctatcggcgctggccaactat
ccgctgacaaccagcgaactgttgcgaatttacgattcgatcagcgacaacggcacccgg
ctgagcgatgtgatcagcggcttccaagaggacgaagatgcctcttcgccgatatcggag
gaagaaataccgctgacttcggatgatccggatgcggtagtcggcgaggacgaagaggaa
gcgggcgaagaggaagcgagcgaagaggaagcggacgaagaggaagcggacgaagaggaa
gcggacgaaggggaagcgggcgaagaggaagcgggcgaagaggaggagcaaggcgtggtc
gaaagcggccccgaccccgaggaaaccgcccgccgtttcgaggaattgcgcgccctctac
caccaaacccagtccagcgcggacgaactcggtttgcagcacctccaaactcaggcgctg
cgccagcaactcggtgagcgtttcctgcaatttcggctggtaccgaaggcgcttgaccag
ttgatcgccaacctgcatgagatggccgagcgcatccgttcccgcgaaaaggaagtcatg
catatctgcgtcggcaaggcccagatgccgcgcaagacgtttgtcacctcgttcccgcag
aacgagacccggctggattgggtggaggaacagattcaggccggcaagaaatattcatcc
ttactggcggcgcagcgtgacgacgtgctggcggcgcagcgacgattgcaggcgattgaa
acggaagtccggttgtcgatccacgaaatcaaggacatcaaccgccacatgtcgatcgga
gaagccaaggcgcgtcgggccaagaaagagatggtcgaggccaacctgcgactggtgatt
tccatcgccaagaagtacaccaatcgcggtttgcagttcctggatttgatccaggaaggc
aacatcgggctgatgaaggcggtggacaagttcgaataccggcgcggctacaagttttcg
acttacgccacctggtggatccggcaggcgatcacccgctcgatcgccgatcaggcccgc
accatccgcattccggtgcatatgatcgagaccatcaacaaactgaaccggatttcccgg
cagatgctgcaagagatgggtcgtgaaccgactccggaggaactggccaagcgcatggag
atgccggaggacaaggttcgcaaggtgctgaaaatcgccaaggaacccatttcgatggag
acgccgatcggcgacgacgaagattcgcacttgggcgacttcatcgaggacctcatggtg
atgtcgccggtggaagcagccacggtcgaagggttgcgcgaatccactcgcgaagtgttg
tcgacgctgaccccgcgtgaagccaaggtgttgcgaatgcggttcggcatcgatatgccg
accgatcacaccctggaggaggtcggtaaacagttcgacgtgactcgcgagcgcatccgc
cagattgaagccaaggccctgcgtaagctgcggcacccgaatcgctcggagcaactgcgc
agcttcctggatctggattga
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integrated database retrieval system
