Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_11650
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Entry
IPM89_11650 CDS
T10208
Name
(GenBank) PAS domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly03030
DNA replication
cbly03430
Mismatch repair
cbly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IPM89_11650
03430 Mismatch repair
IPM89_11650
03440 Homologous recombination
IPM89_11650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbly03032
]
IPM89_11650
03400 DNA repair and recombination proteins [BR:
cbly03400
]
IPM89_11650
Enzymes [BR:
cbly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IPM89_11650
DNA replication proteins [BR:
cbly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IPM89_11650
DNA repair and recombination proteins [BR:
cbly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IPM89_11650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PAS
PAS_4
PAS_9
DNA_pol_A_exo1
PAS_7
RNase_H_2
DEDDh_C
Rv2179c-like
PAS_10
DUF5994
Motif
Other DBs
NCBI-ProteinID:
QQS53524
LinkDB
All DBs
Position
complement(2593894..2596017)
Genome browser
AA seq
707 aa
AA seq
DB search
MKLRLVFALVFAAITLTALAAVTTALWLAFAELVRSGKLAASFEPWSYLMHYAAVAGFFL
IAAIAAAWFFCDQLVAAPLTSLTRGLLTTLHANPDHEIQYAGPSQLGPLFQAVNELTRRL
AAHHRELLQAMTTATARVEEQKSRLEAILMDLQEGVVVCNLNNQVLLYNQLALKILHVTG
ELGLGRPLFTVVTREPVSNAFRRLRLRVAEGRHHQHPMGITTRFVCATTDSQHTLHAQMT
LILGTEESPTGYVITFNDITEDLAALGKRDRLLREATEGLRAPIANLRAAAEMQAANPDM
DRAAHRTFDEVVFKESTALSETVNRLCHEYRDVITGYWPMSDDLSATLLELVAQRLKETS
DIAVTVVHLPQWLHGDSHSVILLHEYLVRRISAQTGGKVFDIGAEAGPRQIYIDTVWRGE
PVPAAVLDGWLDAVLPGAPGGLTVRDVLDHHQSEIWSDRPGDGWARVRVPLPPARGMHMA
SELPPRPEFYDFSLLQQTAPGGDLAERPLKSLDYVVFDLETTGLKPSEGDEIVSIAGVRI
VNGRILTGETFDRLVNPGRLVPKDSTRFHGITDDMVQGKPPAHLVLPQFRQFAGDAVLVA
HNAAFDLKFLKLKEAESGVVFDNPVLDTLLLSVFLHDHALEHSLDAIAERFGVRVSGRHT
ALGDALVTAGVFVRMLELLEDMEIMTLGQAVAAASTIVEVRARQRQF
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcgacttgtttttgcgctggtattcgccgccatcactctcaccgcgctggcg
gcggtcacgaccgcactgtggctggcattcgccgagctggtccggagcggcaagctggcg
gcgagcttcgaaccctggagctatctgatgcactacgcggccgtcgccggcttctttctg
atcgccgcaatcgccgccgcctggtttttctgcgatcaactggtggcggcgcccctgacc
agcctgacccgcggcctgctcaccaccctgcacgccaatcccgatcatgaaatccagtac
gccggaccgagccagttggggccgttgtttcaggccgtcaatgaactgacccggcgtctc
gccgcccaccaccgcgaactgcttcaggccatgaccaccgccaccgcgcgggtcgaggag
cagaaaagccggctggaagccatcctgatggacttacaggaaggggtggtggtgtgcaat
ctcaacaatcaggtgctgctgtacaatcaattggctctaaaaatcctgcacgtcaccggt
gaactcgggctcggtcgcccgttgttcaccgtggtaacccgcgaaccggtttccaatgcc
ttccgccgcctgcgcctgcgtgtggccgaaggccgccaccaccagcacccgatgggtatc
accacgcgcttcgtctgtgccaccaccgacagccagcataccctgcatgcccagatgacc
ctgattctcggcactgaggaatcgcccaccggctatgtcattaccttcaacgacatcacc
gaggatctggcggcgctgggcaagcgcgaccgtctgctgcgcgaagccaccgagggtttg
cgggcaccgatcgccaacctgcgcgcggcggcggagatgcaggccgccaatccggacatg
gatagggccgcgcaccgcaccttcgatgaagtggtattcaaggagagtaccgcgctgagc
gagacggtgaaccgcctgtgccacgagtatcgcgacgtgatcaccggctactggccgatg
agcgatgatctgtccgccactctgttggagttggtggcgcagcggctgaaagaaacctcg
gacatcgcggtcaccgtggtccacctgccgcagtggctgcacggcgacagccattcggtc
attctgctgcatgagtatctggtccgccgcatcagcgcccagaccggcggcaaggtcttc
gacatcggcgccgaggccgggccgcgccaaatctatatcgacaccgtctggcgcggcgaa
ccagtgccggcggccgtgctcgacggctggctggacgctgtcctgccaggtgcccctggc
ggcctcaccgtgcgcgacgtgctcgaccatcaccagagcgagatctggagcgaccgcccc
ggcgatggatgggcccgggttcgggtgccgctgccgccggctcgtggcatgcacatggcc
agtgaactgccgccgcggccggagttctacgatttcagcctgttgcagcagacggcgccg
ggcggcgatctggccgaacggccgctcaagtcgctcgattacgtggtgttcgatctggaa
accaccgggctcaagccctcggagggcgacgagatcgtttccatcgccggggtgcgcatc
gtcaatggccgcattcttaccggtgagacttttgatcgtctggtcaatcccggccgtctc
gttcccaaggactccacccgcttccacggcatcaccgacgacatggtccagggcaagcca
cccgcgcatctggtgttgccccagtttcgccagttcgccggcgatgccgtgctggtcgcg
cacaacgccgcgttcgacctgaagtttctcaagttgaaggaagcggaaagcggtgtcgtc
ttcgataacccggtgctcgataccctgctgctatcggtgttcctccacgaccacgcgctg
gaacatagtctggatgccatcgccgagcgcttcggggtgcgggtatcgggccgccacacc
gcgctgggcgatgctctggtgaccgccggggtcttcgtgcgcatgttggaattgctggaa
gatatggaaatcatgaccctggggcaggctgtcgccgccgcctcgaccatcgtcgaggtg
cgagcgcgacagcggcagttctga
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