Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_12270
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Entry
IPM89_12270 CDS
T10208
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IPM89_12270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbly03400
]
IPM89_12270 (mfd)
Enzymes [BR:
cbly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IPM89_12270 (mfd)
DNA repair and recombination proteins [BR:
cbly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IPM89_12270 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QQS55906
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All DBs
Position
2729787..2733248
Genome browser
AA seq
1153 aa
AA seq
DB search
MSATVQAPKTSSPLQPVLPPDNRRPLGWGRLHGASPALLIAATAARYRGLVLAIAPDSQS
ALRLETELRVFGGADLDILAFPDWETLPYDLFSPHQDIVSQRLATLYRLPQRRRGVLVVP
VATLMQRLAPRGYLDGYALLLKVGERLDLEPFRQRLEAAGYLCVSQVVEHGEFAVRGSIL
DLFPMGGERPYRIELFDDEVESIRDFDPDTQLSVAKAEYIELLPAREFPLDKESMTRFRQ
AYRRQFEGDPQRGVIYREVSDGHAPGGIEYYLPLFFEQTATLFDYLPENTLAIRLEGADQ
ALAAFQEQLMERYEQRRHDAERPLLPPPLLFLDAAQVESALARRLRIELREAEDAEINYP
TEPPPALPFEPRAPQPGAALHAFLTAFPGRVLVAAESAGRREALLDTLRGHGLQPALCEG
WTEFLAREDLRLALAVAPLEQGLLLTEPPLAVIAEPQLYGERVRQQRRRGPSRDPDTIIR
NLTDLNLGAPVVHEEHGIGRYAGLERLEVAGIDGEFVVVEYAGDDRLYVPVASLHLLSRY
TGAAPESAPLHRLGSGQWEKVRRKATEQVNDAAAELLDLYARREARPGHAFALPEADYAV
FAATFPFEETPDQQLAIEAVIADLRSGRPMDRVVCGDVGFGKTEVAMRAAFVAVQDGRQV
AVLAPTTLLAQQHYQNFLDRFADWPVRVELLSRFRSTQQQTETLKALADGGADILIGTHK
LLQGSVKFKQLGLVVIDEEHRFGVRQKERLKALRAEVDVLTLTATPIPRTLNMAMAGLRE
LSIIATPPAGRLAVKTFVGEWNKATIQEACQRELKRGGQIYFLHNEVETIQRMAAQVAEL
APTARIAVAHGQMRERELEQVMLDFYHRRCNLLICTTIIESGIDVPSANTIVINRADKLG
LAQLHQLRGRVGRSHHRAYAYLIVPPRKAMTTDAVKRIEAIESLEDLGAGFLLASHDLEI
RGAGELLGEAQSGQIHEVGFTLYMDLLERAIQALKAGRAPDLDRPLDHGPEIDLQSPALI
PDDYLPDVHSRLILYKRIASARDGEELRELQVEMIDRFGLLPAPVKTLFRVTGLKLRATP
VGVKKIEAGPKGGRIVFGPEPKVDSAKLVRLIQSQSQVYKLDGKDRLRFIKDLPDAEARA
TTVERLLEEIGTG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccaccgtgcaagcgcccaaaacctcttcaccgttgcagcccgtgttgccgccc
gacaaccgccggcctctgggttgggggcggttgcacggcgccagccccgccctgctgatc
gccgccaccgctgcccgctatcgcgggctggtgctagccatcgctccggacagccaaagc
gcgctgcggctggaaacggagctgcgggtattcggcggcgcggatctggacatcctggcg
tttcccgattgggaaacgctgccctacgacctgttttcgccgcatcaggacatcgtgtcg
cagcgactggcaacgctgtaccggctgccgcaacggcggcgtggcgtgctggtggtgccg
gtggcgacgctgatgcagcgcttggccccgcgtggctatctggacggctatgccctgttg
ctcaaggtcggcgagcgcctggatctggagccgttccgccagcggctggaggcggccggc
tacctctgcgtgtcgcaggtggtcgagcacggcgagttcgcggtgcgtggttcgattctc
gatctgtttccgatgggcggcgagcggccctaccgaatcgaactgttcgacgacgaggtg
gaaagcattcgcgatttcgacccggacacccaactgtcggtggccaaggccgagtacatc
gagctgctgccggcgcgggagtttcccttggacaaggagagcatgacccgcttccgtcag
gcctatcgccgtcagttcgaaggcgacccgcaacgcggcgtgatctatcgcgaggtgagc
gacggccacgcgcccggcgggatcgagtattacctgccgctgtttttcgagcagaccgcc
acgctgttcgattatctgccggaaaataccctggcgatccggctggagggagcggaccag
gcgctggcggcgttccaggagcagctcatggagcgctacgaacagcgtcgccacgatgcg
gaacgaccgctgttgccgccaccgttgctgttcctggacgcggcccaggtggaaagcgcg
ctggcgcgccgcttgcggatcgagttgcgggaggcggaagacgccgagatcaactacccc
accgaaccgccgccggccctgccgttcgagccacgcgccccgcaacccggcgccgcgctg
cacgccttcctgacggcatttccggggcgggtgctggtggccgccgaatccgctggccgg
cgcgaggcgctgctggatacgctgcgtggccatggcctgcaaccggcgctgtgcgaggga
tggacggaattcctggcgcgggaggatctgcggctggcgctggcggtggcgccgctggag
caggggctgctgctgaccgagccgccgctggcggtcatcgccgaaccgcagttgtacggc
gagcgggtgcgccagcagcgtcggcgcggtccaagccgcgaccccgacaccatcattcgc
aatctcaccgacctcaatctcggcgcgcccgtcgtccacgaggagcacggcatcggccgc
tacgccggactggagcggctggaggtggccggtatcgacggcgagttcgtggtggtggag
tacgccggtgatgaccgcctgtacgtgccggtggcgtccctgcacctgctcagccgctac
accggggccgccccggaaagcgcgccactgcaccggctgggcagcggccagtgggaaaaa
gtccggcgcaaggccaccgaacaggtcaacgacgcggcggcggaactgctggacctgtac
gcccgccgcgaggcccggcccggccatgccttcgccctgcccgaggccgattacgccgtc
ttcgccgctaccttcccgttcgaggaaacccccgaccagcagctcgccatcgaggcggtg
atcgccgatctgcgctcgggccggcccatggatcgagtggtgtgcggcgatgtcggtttc
ggcaagaccgaggtggcgatgcgcgccgccttcgtggcggtgcaggacggccgacaggtg
gcggtgctggccccgaccaccctgctggcccaacagcactatcagaattttctcgaccgc
ttcgccgactggccggtgcgggtcgaactgctgtcccgcttccgctcgacccagcaacag
accgagacgctgaaggcgctggccgacggcggagcggacattctgatcggcactcacaag
ctgttgcagggcagcgtaaaattcaaacagttggggctggtcgtcatcgacgaggagcac
cgcttcggagtgcggcagaaggagcggctgaaggcgctgcgggccgaggtggacgtgctg
accctgaccgccacgccgattccccgcactctgaacatggcgatggccggcttgcgcgaa
ttgtcgatcatcgccaccccgccggccgggcggctggcggtcaagaccttcgtcggcgag
tggaacaaggcgaccatccaggaagcctgccagcgcgaactgaagcgcggcgggcagatt
tatttcctgcacaacgaggtggagaccatccagcgcatggccgcgcaggtggcggaactg
gcgccgaccgcccgcatcgcggtcgcccacggtcagatgcgcgaacgggaactggaacag
gtgatgctggatttctatcatcgccgctgcaacctgctgatctgcaccaccatcatcgaa
tcgggcatcgacgtgcccagcgccaacaccatcgtcatcaatcgcgccgacaagctgggt
ttggcgcagttgcaccagttgcgcgggcgggtggggcgttcgcaccatcgcgcctacgct
tacctcatcgttccgccccggaaggcgatgaccacggacgcggtcaaacggatcgaagcg
atcgagtcgctggaggatctgggcgcgggctttctgctggccagtcacgacctggaaatt
cgcggcgccggcgaactgctgggcgaggcgcaaagcggccagattcacgaggtcggtttc
accctgtacatggacctgctggagcgggcgatacaggcgctcaaggccggacgggcgccg
gatctggatcggccgctggatcacggtcccgagatcgatctgcaaagcccggcgctgatc
ccggacgactatctgcccgatgtccacagccgcctgattctgtacaagcgcatcgccagc
gcccgcgacggggaggaattgcgcgagttgcaggtcgagatgatcgaccgcttcgggctg
ctgccggcaccggtcaaaaccctgtttcgggtgaccgggctgaagctgcgggccaccccg
gtgggggtgaagaaaatcgaggcgggaccgaaaggcgggcggatcgtgtttgggccggag
ccgaaggtggactcggccaaactggtgcggctgattcaatcgcagtcccaggtttacaag
ctggatggcaaggacaggctacgcttcattaaggacttgcccgacgcggaggcgcgagca
acgacggtggagcggttgttggaagagatcggcacgggataa
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