Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_13930
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Entry
IPM89_13930 CDS
T10208
Name
(GenBank) PAS domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly03030
DNA replication
cbly03430
Mismatch repair
cbly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IPM89_13930
03430 Mismatch repair
IPM89_13930
03440 Homologous recombination
IPM89_13930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbly03032
]
IPM89_13930
03400 DNA repair and recombination proteins [BR:
cbly03400
]
IPM89_13930
Enzymes [BR:
cbly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IPM89_13930
DNA replication proteins [BR:
cbly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IPM89_13930
DNA repair and recombination proteins [BR:
cbly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IPM89_13930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PAS_9
DNA_pol_A_exo1
PAS_4
PAS
PAS_8
RNase_H_2
HisKA
PAS_7
DEDDh_C
DUF4191
Motif
Other DBs
NCBI-ProteinID:
QQS53918
LinkDB
All DBs
Position
complement(3087149..3089245)
Genome browser
AA seq
698 aa
AA seq
DB search
MRYRTKLWLLWLVPVVLTLASLTWLGWQIHQVVPDPGQRDQTLLWLMLAVFAIVGVITTI
WAMLDWYCFIPLGAMARGARIITRSNPGYVLELPRQHWLGAFPTMLLELGEALHKARREV
AAATAIGTQEIEEQKARLETVLRELSEGVLVCDGEARILLYNPAAVKLLPNREALGLGRP
LYDLWTRAPLESTLQLLRFRQQNSSDGKPPGDAEFVCATVNDETLFHCRMSLLPGAGERG
AAFVITFRDITQQMDRSLLKTRTEDLRQPLANLRAAAENVMNFASMGPTQREAFQRVIVE
ESERLSQRLQELTLDLRKLYASRWPMNDVYSADLIGAVIHHLEQCAGPKVKMVGIPLWLN
VDNHSIMLLLEHLLEQLRTHELGDDFEIECLLGNRRVYLDIIWPGQPVPTNRLEDWLNEH
VQDLVGETTVGEVLRRHNSDLWSQSHRRAGHALLRMPLPASSRQWREPAEALPDRPEFYD
FSLAENLEEWGDLVNYPLAALTYVVFDTETTGLSPSKGDEIIQIAGVRIVNRRMLAGEHF
DQLVNPGRPIPKASIRFHGITDDMITDKPGIEIVLPQFRSFVGDDRTVLVAHNAAFDMRF
LKLKERKTGVRFGNPVLDTLLLSGYLHDYTDDHNLDAIADRLGVDIHDRHTALGDSLVTA
QVFLKLLDLLEAQGVQTLGQALEASDKMVEIRKTQANF
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgcgctatcggaccaagctctggctgttgtggctggttccggtcgtcctgacgctggcc
tccctgacttggctgggctggcaaattcatcaagtagtgccggaccccggccagcgcgat
cagactctgctatggctgatgctggccgtcttcgccatcgtcggcgtgatcacgacgatt
tgggcgatgctcgactggtattgctttatccccctcggcgccatggcccgcggtgcccga
atcatcacccgcagcaatcccggttatgtgctggaactgccgcgccaacactggttgggc
gcttttccgaccatgctgctggaactgggcgaggcgctgcacaaggcccggcgcgaggtc
gccgccgccaccgccatcggcacccaggaaatcgaagagcaaaaagcccgactggaaacc
gtgctacgggaattgtccgagggcgtgctggtctgcgacggtgaggcgcgcatcctgctt
tacaatccagcggcggtgaaactgctgcccaaccgcgaggcgctggggctgggccggccg
ctgtacgacctatggacccgcgcgccgctcgaaagcaccctgcaactgctgcgcttccgc
caacagaacagcagcgacggcaaaccgcccggcgacgccgaattcgtgtgcgccaccgtc
aacgacgagaccctgttccactgccggatgagcctgctgccgggcgccggcgagcggggc
gccgccttcgttatcaccttccgcgacatcacccagcagatggaccgctcgctgctcaag
acccgcaccgaggacctgcgccagccactggccaacctgcgggcggcggcggaaaacgtc
atgaatttcgccagcatgggcccgacgcagcgggaagctttccagcgggtgatcgtcgaa
gagagcgagcgcctcagtcaacgcttgcaggagctgacgcttgacctgcgcaaactttat
gccagccgctggccgatgaacgacgtctattccgccgatctgatcggggccgtcatccat
cacttggagcagtgcgcgggtccgaaggtcaagatggtgggcataccgctgtggctgaac
gtggacaaccactcgatcatgctgctgctcgaacacctgctcgaacaattgcgcacccac
gaactcggcgatgatttcgagattgaatgtctgctgggcaaccgccgcgtctatctggac
atcatctggccgggtcagccggtgcccaccaatcggctggaagactggctgaacgagcat
gttcaggatctggtgggcgaaaccacggtcggtgaagtgctgcggcggcacaacagcgac
ctgtggagccaatcccaccgccgggcgggccacgccctgctgcggatgccgctgccggca
tcctcgcgccagtggcgggaaccggccgaagccctgccggaccggccggagttctatgat
ttctccttggccgagaacctggaagaatggggcgacttggtcaattatccgctggcggcc
ttgacctacgtggtcttcgacaccgaaaccaccgggctgtcgccctccaagggcgacgag
atcatccagatcgccggcgtgcgcatcgtcaaccgccggatgctggcgggcgagcacttc
gaccaattggtcaaccccggccggccgattcccaaggcctccatccgcttccacggcatc
accgacgacatgatcacggacaagcccggcatcgagatcgtgctgccccagttccgctcc
ttcgtcggcgacgaccgcaccgtgctggtggcgcacaacgccgccttcgacatgaggttc
ctcaaactgaaggaacggaaaaccggcgtgcgcttcggcaacccggtgctggacactttg
ctgctgtccggctacctgcacgattacaccgacgatcataatctggacgccatcgccgac
cggctgggggtggacatacacgaccgtcataccgcgctgggcgattcgctggtgaccgcc
caggtgtttctcaagctgctcgatctactggaagcacagggcgtccaaaccctgggtcaa
gcgctggaagcctccgacaagatggtggaaatccgcaagacccaggcgaatttttaa
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