Clostridium botulinum F 230613: CBF_0006
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Entry
CBF_0006 CDS
T01865
Symbol
gyrB
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
cbm
Clostridium botulinum F 230613
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbm03032
]
CBF_0006 (gyrB)
03400 DNA repair and recombination proteins [BR:
cbm03400
]
CBF_0006 (gyrB)
Enzymes [BR:
cbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
CBF_0006 (gyrB)
DNA replication proteins [BR:
cbm03032
]
Prokaryotic type
DNA Topoisomerases
CBF_0006 (gyrB)
DNA repair and recombination proteins [BR:
cbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CBF_0006 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ADF97859
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All DBs
Position
4404..6317
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AA seq
637 aa
AA seq
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MSQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCT
HIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGLHG
VGASVVNALSEQCEVEVRREGHIWKQRFERGITKTGLDIVGDTEDHGTKIYFKPDIEIFD
ELEFEYDTLAQRLRELAFLNKGIKISLTDERYDKKEMFHYEGGLRSFVLYLNRNKEKLHQ
QPIYVDKNKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAINDYAR
KFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIVGESIG
SFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSKDPSLC
EIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGAGI
GKEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPPLYRIFK
AKKEIYVYSDPELDAALLELGGKDTNTNIQRYKGLGEMNPEQLWDTTMDPEHRTLLQVTI
EDAMVADEIFTILMGTKVEPRREFIENNADKVVNLDI
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagaaaataaacaagtttatgatgaaagtcaaattcaagtgttggaaggttta
gaagctgttagaaaaagaccaggaatgtatattggaagcactagtttaaggggacttcat
catttggtttatgaaatagttgataatagcatagatgaagcactagctggtttttgtaca
catatagaagtttttatacataaagataattctataactgtggtagatgatggtcgtgga
atgccagttggtatgcattcaaaagtaaaaaaacctgctgttgaagtaataatgactata
ttacatgcaggtggaaaatttggtggtggaggatataaggtttctggtggacttcatggt
gttggagcttctgttgttaatgccttatcagaacaatgtgaagtagaagtaagaagagaa
ggccatatttggaaacaaagattcgaaagaggtataacaaaaactggattggatatagtt
ggagatacggaagatcatggtacaaaaatatattttaagccagatattgaaatatttgat
gaattagaatttgaatatgatactttagctcaaagacttagagaattagcctttttaaac
aaaggtataaaaatttcattaacagatgaaagatatgataaaaaagaaatgtttcactat
gagggcggattgagatcttttgtactttatttaaacagaaataaggaaaaattacatcaa
caacctatatatgttgataaaaataaagatggatgtatagttgaaattgctatgcaatat
aacgatggttatgcagaaaacattttttcctttgctaacaatatagacacaatagaaggt
ggaactcatttagctggatttaaatcagctttaacaagagctataaatgactatgctaga
aaatttaattatttaaaagatacagataaaaatttatcaggagacgatgttagggaaggt
ctaacagcagttatttcagtaaaattgacagatcctcaatttgaaggacagacaaagaca
aagttaggaaatagtgaagtaagaggaattgtagatacaatagtaggtgaaagcataggt
tcattcttagaggaaaaccctaatgtaggtaaaataataattgaaaaaggcttgtcagcc
tcaagagctagagaagctgcaaaaagggctagggaacttactagaagaaaatctgtttta
gaaagtacttctcttcctggaaaattagcagattgttcttcaaaggatccatcattatgt
gaaatttatttagtcgaaggagattctgccggtggatctgcaaaacaaggaagaaataga
gagttccaggctattctacctttaaaaggtaaaataatgaatgttgaaaagcaaagattg
gataaaatattagcttcagatgaaatacgtgctatgataacagcctttggagcaggaata
ggaaaagaatttgatattgagaaaataagatataatagaataattataatgacagatgcg
gatgtagatggagcacacataagaactttacttttaacattcttttatagatacatgaaa
gagttaatagaagaaggtcatgtttatatagctcaaccaccactttatagaatatttaag
gctaaaaaagaaatttatgtttattcagatcctgaattggatgctgcattattagaatta
ggtggaaaagatactaacacaaatattcaaagatataaaggtcttggagaaatgaaccca
gaacaactttgggatactactatggacccagaacatagaactttattacaggtaacaata
gaggatgctatggtagcagatgagatatttactatactcatgggaacaaaagtagaacca
agaagagaatttatagaaaataatgctgataaggtagttaacttggatatataa
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