Clostridium botulinum F 230613: CBF_0560
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Entry
CBF_0560 CDS
T01865
Name
(GenBank) putative ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CBF_0560
09124 Replication and repair
03420 Nucleotide excision repair
CBF_0560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbm03021
]
CBF_0560
03036 Chromosome and associated proteins [BR:
cbm03036
]
CBF_0560
03400 DNA repair and recombination proteins [BR:
cbm03400
]
CBF_0560
Enzymes [BR:
cbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CBF_0560
Transcription machinery [BR:
cbm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CBF_0560
Chromosome and associated proteins [BR:
cbm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CBF_0560
DNA repair and recombination proteins [BR:
cbm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CBF_0560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
PDDEXK_1
ResIII
PhoH
Motif
Other DBs
NCBI-ProteinID:
ADF98337
LinkDB
All DBs
Position
615076..617430
Genome browser
AA seq
784 aa
AA seq
DB search
MECKGEVNISVRNLVEFILRNGDIDIGYLGGSRAQEGIKAHKKLQKIRMESATPLLMIEY
EKEVLLKYAIEYKDFLFKVEGRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKC
YAFIYSKEKNLEKINVKLTYYNIKNENIKSIDKTFEIQELEEFFYDIIHKYYVWIEFNYR
FKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSIK
AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSSEK
CEFAKGHFDRINEAILDILNNENIIDETVIKKYALKHKVCPFEFSLDISLWCDGIICDYN
YVFDPRVHLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSSSISKNNVLSLRKSIKDKSKA
LYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTAEIEVLMMKGNFQIDDEL
LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSG
TFSPIKYFREVLGGDDEDYVLKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINM
ACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNSSMSDEEREEFIDKFEKEAEN
VIGFCVLGGIFSEGIDLTGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY
PGMTKVMQAAGRVIRTELDKGIILLIDERFNSYSYKEIFPKHWYPNINVKNEKELEGALK
EFWN
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaatgcaagggtgaagtgaatatatccgttagaaatttagtggagtttatattaaga
aacggagatattgatattggatatttggggggaagcagagctcaagaagggataaaagca
cataagaagttgcaaaaaattaggatggaaagtgctacccctttactcatgattgaatat
gagaaagaagttttattaaaatatgctatagaatataaagattttttatttaaagtagag
ggaagagcagatggaattattatagaaaatgactctattactatagaagagattaagact
acaactaaaaacttggatgaaattaaagataatttactacactgggctcaagctaagtgt
tacgcctttatttattcaaaggagaaaaatcttgaaaaaattaatgttaaattaacttat
tataatattaaaaatgaaaacattaaaagtatagataaaacttttgaaatacaggaatta
gaagaatttttttatgatattatacataaatattatgtttggatagagtttaattataga
tttaagcaggaaagaaatagggacattaaattattaaagtttccctttaaagaatataga
gaaggccaaagaaaattagctgtatctgtttataagactataagtgaaaataaaaatata
tttatagaagctcctacaggtatagggaaaactatttctacaatattcccaagtattaag
gctataggagaaggtaaaatagataaaattttttatttaacagctaagaatactacaaga
gattttgttttgagcaattttaaaaatatggtaaataggggaatggcttttaaagttatt
actttaatttccaaggaaaagatttgtcttaaagaggagtttaaatgttcatcggaaaag
tgtgagtttgctaaaggccattttgatagaataaatgaagctatattagatattttaaat
aatgaaaatattatagatgaaaccgttataaaaaaatatgcattaaaacataaagtttgt
ccctttgaattttctttagatataagtttatggtgtgatgggataatctgtgattataat
tatgtttttgatcctagagtacatttaagaagatttttttctgatgggaaggatgatttt
gtattactgatagatgaagctcataatttattagatagatctagagaaatgttttcttca
tctatatctaaaaataatgttttaagtttaagaaagtctattaaagataaaagtaaagct
ttatatagaattttaggaaaaataaataaagaacttttagatataaaaaaaatatatgaa
gtggataattattatatggaaaaagaaaagccagaaaagctgcaaatattattaaataat
tttacagcagagattgaagtgcttatgatgaaaggaaactttcaaatagatgatgaatta
cttaatttttattttgaggctttatattttctaaagatatgtgaattatatggagataat
tatataacctatggagaagaatataatagtgattttacaattaaactttttgctatagat
acttcaggtttattaaatgaaattttaaaaaagtcaaaggcaaacatatttttttcagga
accttttctcctataaaatatttcagagaagttttaggaggagacgatgaagattatgtt
ttaaaattaaattctccttttccaatagaaaaccataggattttaataggttacaatgtt
tctacaaaatataaaaatagatgcaaaagctatgagaatatatgtgattatataaatatg
gcctgcaaaataaagaaaggaaactatatggtttttttcccatcctataaatatatgaaa
gaagtttttttattatataaagaaaaatatccagaagagaatgttatagttcaaaattct
tctatgagtgatgaagagagagaagaatttatagataaatttgaaaaagaagcagaaaat
gtaataggtttttgtgtattgggtgggattttttcagaaggaattgatttaacaggggat
aaaataataggagctataataataggagtaggattaccacaaatatgtgtagaaagaaat
ctaataaagaattattatgatgataagaaacagtctggctttcagtattcatatatttat
ccgggaatgactaaagttatgcaggctgctggtagagtaataagaacagagctggataaa
ggaataatactacttattgatgaacggtttaatagttattcctataaagagatattccct
aaacactggtatcctaatattaatgtgaaaaatgagaaagaattagaaggagctttaaag
gaattttggaattaa
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