Clostridium botulinum F 230613: CBF_1047
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Entry
CBF_1047 CDS
T01865
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBF_1047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbm03019
]
CBF_1047
03400 DNA repair and recombination proteins [BR:
cbm03400
]
CBF_1047
Enzymes [BR:
cbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBF_1047
Messenger RNA biogenesis [BR:
cbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBF_1047
DNA repair and recombination proteins [BR:
cbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CBF_1047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Trans_coact
HHH
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADF98809
LinkDB
All DBs
Position
1118203..1120332
Genome browser
AA seq
709 aa
AA seq
DB search
MLESAKNLLKKHFGYNEFRKAQEKVIESILKKEDTVAIMPTGAGKSICYQIPALIFEGVT
VVISPLISLMKDQVDSLKEVGIEATYINSSLNNLEIEERIFNAREGLYKLIYIAPERLES
DNFVRSLNNLNIALVAVDEAHCVSQWGHDFRPSYTKISNFIRKLSKRPIVTAFTATATET
VRRDILKSLELQNPKVFVTGFDRENLSFSVIKGEDKEKFIFDYLENNIGKVGIIYTSTRK
EAESLYNKINKKGYTVGVYHAGLSDEERKKTQEDFSFDNIEIIVATNAFGMGIDKSNVRF
VIHHNIPKNMEAYYQEAGRAGRDGEESECILLFSPNDIRLQKYFIDESFLSPERKNNEYN
KLRAMVDYCYTSKCLRSYILEYFGEDALEEKCNNCSTCNDNREEKDITLEAQKIFSCVYR
MKERFGVNMVADVLRGSKNKKLLSLDLDGLSTYGIMEEFTQKDIVALMNKLIADDYMVTT
DDKFPVVRLRSKSHDVLKGKEIVSIKVSKIEKKVKADNELFEILKQLRKAISQEESVPPF
MIFPDATLKELSEYMPTKEEDLLKIKGIGERKAEVYGERFIEAITEYMNEKGIDINNMDN
YESTKSNKESKIKTHVLSYNLYKEGKTIKEISEERNLKAITIQEHLFKCLSEGMEVDLDN
FIKKDYEKLILDTIKKVGGTKLKPVKDELPLEVDYMCIKSVWYKYKDII
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttagagagcgctaaaaatttactaaaaaaacattttggatataatgaatttagaaaa
gctcaagaaaaggtaatagaaagtattttaaaaaaagaagatacagtagctattatgcct
acaggagcaggaaaatcaatatgttatcaaatacctgcattgatttttgaaggggtaacg
gtagtaatatctcctcttatttctcttatgaaagaccaagtagattctttaaaagaagtt
ggaatagaggctacatacataaatagttctctaaataatttagaaatagaagaaagaata
tttaatgcaagggaagggctttataagcttatttatatagctccagaaagattagaatct
gataactttgtaagaagtttaaataatttaaatatagctttggtagcggtagatgaggca
cattgtgtatctcagtggggacatgattttagaccaagttacacaaaaataagtaatttt
ataagaaaattatctaagagacctattgtaacagcttttacagctacagccacagaaact
gttagaagggatatattaaaaagtttagaacttcaaaaccctaaggtatttgtaacaggt
tttgatagagaaaatttaagcttttctgttataaagggagaagacaaagaaaaatttata
tttgattatttggaaaataatataggtaaggtaggtataatatatacatctacaagaaaa
gaagcggaaagcttatataacaagataaataaaaaaggttatacagtaggagtatatcat
gcagggctaagtgatgaagaaagaaagaaaacacaagaagatttttcttttgataatata
gaaataatagtagccactaatgcctttggtatgggaatagataaatctaatgtaagattt
gttatacatcataacatacctaaaaatatggaagcctattatcaagaagcaggtcgtgcc
gggagagatggagaagaaagtgaatgtatattattattctctcctaatgatattcgactt
caaaaatattttatagatgaaagctttttatccccggaaagaaaaaataatgaatataac
aaattaagagctatggtagattattgctacacctcaaaatgcttaagatcttatatatta
gaatattttggggaagatgctttagaagaaaaatgtaataattgtagtacttgcaatgac
aatagagaagaaaaggatataaccttagaagcacaaaagatattttcatgtgtttataga
atgaaggaacgttttggtgtaaatatggtagcagatgtgcttagaggatcaaaaaataaa
aagcttttatccttagatttagatggattatctacttatggcattatggaggaattcact
caaaaggatatagtagctttgatgaataaactaatagcggatgattacatggtaactaca
gatgataaatttcccgttgtaaggctaaggtcaaaatcccatgatgtgttaaaaggaaaa
gaaattgtatctataaaagttagcaaaatagagaagaaagtaaaagcagataatgaattg
tttgagattttaaaacagttaagaaaagcaatatctcaagaggaatctgtaccaccattt
atgatattcccagatgctactttaaaagaacttagtgaatacatgcctacaaaagaggaa
gatttattaaaaattaaaggtataggggaaagaaaagctgaagtttatggagaaaggttt
atagaagctattacagaatatatgaatgaaaagggaatagatattaataatatggataat
tatgaaagtactaaaagtaataaggagtctaaaataaagacccatgtattaagctataac
ctatacaaagaaggaaaaacaataaaagaaatttcagaggagcgaaacctaaaagctata
actatacaagagcatttatttaagtgtttgtcagaaggtatggaagttgacttagataat
tttataaaaaaggattatgagaagctcatattagatactataaaaaaagttggcggaaca
aagctaaagccagtaaaggatgaattaccactggaagtggattatatgtgtataaaatcc
gtatggtataaatataaagatataatttaa
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