Clostridium botulinum F 230613: CBF_1757
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Entry
CBF_1757 CDS
T01865
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBF_1757 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbm03019
]
CBF_1757 (deaD)
03009 Ribosome biogenesis [BR:
cbm03009
]
CBF_1757 (deaD)
Enzymes [BR:
cbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBF_1757 (deaD)
Messenger RNA biogenesis [BR:
cbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBF_1757 (deaD)
Ribosome biogenesis [BR:
cbm03009
]
Prokaryotic type
rRNA helicases
CBF_1757 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
UvrD-helicase
SWI2_SNF2
AAA_30
Helicase_C_2
AmiA-like
CD4-extracel
Motif
Other DBs
NCBI-ProteinID:
ADF99468
LinkDB
All DBs
Position
1896332..1897777
Genome browser
AA seq
481 aa
AA seq
DB search
MNKLTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSI
PVCEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK
QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT
MLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIYKE
VVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLVCTD
VAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLRDIEDY
IEKEIPKRKEPSLEEVDKGKKIFEENIKNRIKTKVPKNNKKQKDITKIYISAGRKKKIRP
GDIVGAITSIEGINVDNIGIIDIQDNHSYVDILEGKGDIVLKASEDMKIKGKKVRIQRAV
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattaacttttgaaaattataaattaagtgatgaaatattaaaatccctggga
aaactaggatataaaaatccctctgaggtgcaaaaacaagttataccactaatattaaag
gataaggatattatagtaaagtctgaaaccggtagcggtaagactgcggccttttccata
cctgtctgtgaaaaattagagctagaagaaaaagatcctcaagtattagtgcttacacct
actagggaattagctcttcaaatcaaagaggagatatcaagcatagctttatataaaaga
ttaagatgtacagcgatttttggtaagcagcctatgagccttcaaaagagggaattaaag
caaagagtacatttagttgtaggtactccaggtagaactttagatcatatagaaagggaa
aatttagatttaaaaaagataaagtattttgttttagatgaagcagatgaaatgcttaat
atgggatttatagatcaagtagaagctgttataaaaagattgcctaaaaatagagtaact
atgttgttttcagctactataccggaaaaaatagagaatttatgcaaaaaatatatgaat
aatccccaaaatataaacataaatccagaaaacataactacagacaccataaatcaatgc
tattatgaagttgaggataaagataagttttctcttttacaaaaaataatatataaagaa
gtagtagataattctattatattttgtaatacaagagaaaaggtagatgaagtattaaaa
aatatgaagaaaaaagggcttaacgctgttggtctgcatggtggtatggaacaaaaagat
agattagagactatgaaaaagttcaaagaaggtgaatttcagttcttagtatgtacagat
gtagcagctagaggtattcatatagaaaatataagccatgttataaattatgagatgccc
tatgaaaaagaaagttatgttcatagaatagggagaacaggaagagcaggaaaagaagga
gtagctataacctttatagaacctaataaagttagatttttaagagatatagaagattat
atagagaaggaaatacctaaaaggaaggagccttctttagaagaagtagataagggtaaa
aaaatatttgaagaaaatattaaaaataggattaaaacaaaagtgccaaaaaataataaa
aagcaaaaggatattactaaaatatatataagtgcaggaagaaagaaaaaaattaggcca
ggagatattgtaggtgctattactagtatagaaggcattaatgtagataatataggtata
atagatatacaggataatcactcttatgtagatatactggaaggaaaaggagatatagta
cttaaagctagtgaagatatgaaaataaagggaaaaaaagtaagaatacaaagggcagta
aaataa
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