Clostridium botulinum F 230613: CBF_2449
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Entry
CBF_2449 CDS
T01865
Name
(GenBank) HDIG/HD/KH domain protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBF_2449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbm03019
]
CBF_2449
Messenger RNA biogenesis [BR:
cbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBF_2449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Cas3_HD
PFF1_TM
DUF6007
FUT8_N_cat
COP9_hel_rpt
Motif
Other DBs
NCBI-ProteinID:
ADG00107
LinkDB
All DBs
Position
complement(2579728..2581269)
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AA seq
513 aa
AA seq
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MGPTKYIIIAVVIIIICVILGLYVVDKKAKEKLSEASKEARRLKEEAERDAEAKKKEAIL
EAKEEAHKLRAEVERENRERRNEVQRLERRIIQKEEALDKKSEALENKEEALNKKQQKIE
DVEAHMEELHEKQRTELERISGLTTEQAKEFLLEQVRKEVKHETAVMIKEIETKAKEEAD
KRAREVITYAIQRCAADHVAETTVHVVNLPNDEMKGRIIGREGRNIRTLETLTGVDLIID
DTPEAVILSGFDPIRREVARIALEKLIVDGRIHPARIEEMVEKAKKEVEVSIKEEGEQAT
FETGIHGLHIELIRLLGRLKYRTSYGQNVLKHSIEVSHLAGLMASELGIDPTLAKRVGLL
HDIGKAVDHEVEGPHAIIGSEIAKKYRESALVVNAIGAHHGDMEPQSLEAILVQAADAIS
AARPGARRETLEAYIKRLEKLEEIANECEGVEKSYAIQAGREIRIMVKPEVLDDTGCIEM
ARNIVKQIESELEYPGQIKVNVIRETRAIEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaacgaaatatataataatcgcagtggttattataataatttgtgtaatttta
ggtttatatgtagttgataaaaaagctaaagaaaaattatcagaggcatccaaagaagct
agaagattaaaagaagaggctgaaagagatgcagaggcaaaaaagaaagaagctatatta
gaggctaaagaagaagctcataaattaagagcagaggttgaaagagaaaatagagaaaga
cgtaatgaagttcagcgtcttgaaagaagaataattcaaaaagaagaagctttagataaa
aagagtgaggcccttgaaaacaaagaagaagctttaaacaaaaagcagcaaaaaatagaa
gatgtggaagcacatatggaggaacttcacgaaaagcaaagaacagaattagagagaatt
tcaggacttacaacagaacaggctaaagaatttttattagaacaggttagaaaagaagta
aaacatgaaactgcagtaatgataaaagaaatagaaactaaagctaaggaagaagcagac
aaaagagcaagagaagtcattacatatgccatccaaagatgtgctgcagatcatgtagca
gaaactacagtacatgtagttaatcttcctaacgatgaaatgaaaggaagaataattgga
agagaaggaagaaatataagaacattagaaacgcttacaggggttgatctaataatagat
gatacaccagaagcagttatattatctggtttcgatccaattagaagagaagttgcaaga
attgcgttagaaaaattaatagttgatggaagaatccatccagctagaattgaagaaatg
gttgagaaagctaagaaagaagttgaagttagtattaaagaagaaggagaacaggctacc
tttgaaacaggtattcatggtcttcatattgaattgattagattattaggtagattaaag
tacagaacaagttatggtcaaaatgtattaaagcattctatagaagtttcacatttagca
ggtcttatggcctccgaacttggaatagacccaactttagcaaaaagagtaggtttatta
catgatataggtaaggcagtagaccatgaagttgagggaccacacgcaattataggatct
gagatagctaaaaaataccgtgaatccgcattagtagtaaatgctataggagctcatcat
ggtgatatggaaccacaatctctagaagcaatacttgttcaagcggcagatgctatatct
gcagcaagaccaggagctagaagagaaactttagaagcttatataaagagattagaaaag
ttagaagaaattgcaaatgagtgtgaaggtgtagaaaagtcatatgcaattcaagcggga
agagaaataagaattatggttaaaccagaggtgcttgatgatactggctgtattgaaatg
gctaggaatatagttaaacagatagaaagtgaacttgaatatcctggtcaaataaaggtt
aatgtcatcagagaaacccgtgccattgaatatgctaaataa
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