Clostridium botulinum F 230613: CBF_2469
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Entry
CBF_2469 CDS
T01865
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03030
DNA replication
cbm03430
Mismatch repair
cbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBF_2469 (polC)
03430 Mismatch repair
CBF_2469 (polC)
03440 Homologous recombination
CBF_2469 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbm03032
]
CBF_2469 (polC)
03400 DNA repair and recombination proteins [BR:
cbm03400
]
CBF_2469 (polC)
Enzymes [BR:
cbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CBF_2469 (polC)
DNA replication proteins [BR:
cbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CBF_2469 (polC)
DNA repair and recombination proteins [BR:
cbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CBF_2469 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
Rv2179c-like
tRNA_anti-codon
RNase_H_2
DEDDh_C
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ADG00125
LinkDB
All DBs
Position
complement(2602200..2606498)
Genome browser
AA seq
1432 aa
AA seq
DB search
MENTSVGDLQKEINKEGFDTDKEIKIVRVQYFRKKNKLRIILKSIGNFTKEKEDHIKNIL
KKRFSMVEDFEIICYKDLSNITLEELSKKYWVDIVNLASSSVPIARDCLLKSKREVLEDS
INITYNNEFLCRFLSKNKFEGKLKSYIRDIFGIKCNIKLEYDKSFNEEDYFKTIETMEKS
MIKNVLSEIKSKEKKVIRKENSPKTREEENKDTSVILGRSIKEDSIFMKDLNENSGIVVV
CGDVFKKEVIETKTGRKIVTFFITDYTNSMTVKLFPRPRDADRIIEEIKEGIYCKVRGEV
VNDPYARECVIMAKDIVKTTKIEKMDIAEEKRVELHMHSQMSAMDGMTPVSELVKRAAKW
GHKAVAITDHGVVQAYPDAMSAAKKGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVV
FDLETTGFSSKNDKIIEIGAVKIEKGKIVDRFSEFVNPERSIPDKITELTSITDDMVDDK
EAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLSRFLFPEL
KRYKLNVIAKHLGISLENHHRAVDDAKATADILLKAFEMLKEKEIITLHNLNKEFLGNIN
IKKEPTYHLIILAKNAVGLKNLYKLVSKSNLEYFFKRPRMAKSLINEYKEGLIIGSACEA
GQIYKEILKGKTKEELKNMIDFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELG
EFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKEFEYLGEE
KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVE
KRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVGSRGSVGSSFAATMSDITEVNGLP
PHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKDGHDIPFETFLGFEGDKEPDI
DLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKKYLDEKNIKANNAEIE
RLSKGCTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSISGRL
LKLDILGHDDPTILRMLQDLTKVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYG
LPEFGTKFVRQMLLDTKPKSFAELARISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTRD
DIMVYLLQKELPPKSAFTIMEKVRKGKGLTEEQEALMKEHDVPDWYIESCKKIKYMFPKG
HAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEEKIKEKMNELYAMGNN
IAQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFLIEGDNIRPPLSALQGVGKNAA
KSIEEARLEGEFISKEDLRLRTKVTKTVIETLENHGCLRGMQETNQISLFSL
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggagaatacttcagttggtgatttgcaaaaggaaataaataaagaagggtttgataca
gataaagaaataaaaatagtaagagttcagtattttagaaaaaaaaataaactaagaata
atactaaaatccattggtaattttactaaagaaaaagaagaccatataaaaaatatatta
aagaagagattttctatggtggaggattttgaaataatctgctataaagatctatccaat
attaccctagaggaactttcaaaaaaatattgggtagatatagtgaatttagcttcttct
tctgtacctattgcaagggattgtcttttaaaatctaaaagagaagtgctagaagatagt
ataaatataacctataacaatgaatttttatgtaggtttctttcaaaaaataaatttgaa
ggcaaactgaaatcctatataagagatatatttggaataaaatgcaatataaaattagaa
tatgataaatcttttaatgaagaagattattttaaaactatagaaactatggaaaagtct
atgataaagaatgttttgagtgagattaagtctaaagaaaagaaagtcattagaaaagaa
aattctccaaagactagggaagaggagaataaggatacttctgtcatattaggaagaagt
ataaaagaagatagtatattcatgaaggatttaaatgaaaattctggtatagtagtggta
tgtggagatgtatttaaaaaagaagttatagaaacaaagactgggagaaaaatagtaact
tttttcataacagattacaccaattctatgacagttaaacttttcccaaggcctagagat
gcagatagaataatagaggaaataaaagaggggatttattgcaaagttagaggagaagta
gtaaatgacccttacgcaagagaatgcgtaataatggctaaggatatagtaaaaactaca
aaaatagaaaaaatggatatagcagaggaaaaaagagtagaacttcatatgcatagtcaa
atgagtgccatggatggaatgactccagtatcagaattagtgaaaagagctgctaaatgg
gggcataaagcagtggctattacagatcatggtgtagttcaggcttatccagatgcaatg
tctgcagctaaaaaaggtaatataaaagttatatacggaatagaagcttatcttgtagat
gatggagtacctattgtatctaaagcaggggataaaaccatagaggatacttttgtagtt
tttgatttagaaactacaggcttttccagcaaaaatgataaaataatagaaataggtgca
gtaaagatagaaaagggaaaaatagtagataggtttagtgaatttgtaaatccagaaagg
agcataccagacaaaataacagaacttacaagcataacagatgatatggtagatgataaa
gaagctatagataaaatacttccaagatttatagagtttataggaaactctgtggtggtt
gctcataatgcagcctttgatgtatcttttataaataaaaattgtaaagatctaaaaata
gaatttaaaaatagtgtaatggatactgtaacactaagcagatttttatttcctgaatta
aagagatataaattaaatgttatagcaaagcatttaggcatatcattagagaaccatcat
agagctgtggacgatgctaaagccacagcagatatcttattaaaagcttttgaaatgtta
aaagaaaaagaaataattaccttacataatttaaataaggaatttttaggaaatataaat
ataaaaaaagagcctacctatcatttaataattttggctaaaaatgcagttggtcttaaa
aatttatataaattagtttctaaatctaatttggagtatttctttaaaagaccaagaatg
gctaaaagtcttataaatgagtacaaagaaggacttataataggctctgcctgtgaggcc
ggtcaaatatataaagaaatattaaaagggaaaacaaaagaagaattaaaaaatatgata
gatttttatgattatttagaaatacaacctctaggtaataatgaattccttgtaaaaaac
ggttccgtaaaagatgagaaagagcttcaagaaataaataaaaaaatatgtgaattaggt
gagttttataataaaccagtagtagctacttgtgatgtgcattttttagatgaagaacat
gaagtatttagaagaatattaatgtcaggtcaaggctttagtgatgcagataatcaacca
ccactttattttagaaccacagaggaaatgcttaaagaatttgaatatttaggagaggaa
aaggctaaagaagtagtaatttataatacaaataagatagcagatatgatagatgaaata
aaaccaattccagaggaaacttttccacctaaaatagagggagcggaagaagatataaga
agaatgactatagaaaaggctcatgctatatatggagatccgcttcctgaaatagtagaa
aaaagattaacaaaagaattaaattctataataaacaatggttacgctgtactttattta
atagctcataagctagtggccaaatcctatgaagatggatatttagtaggatccagagga
tccgttggatcttcttttgcagctactatgtcagatattacagaagttaatggattacca
cctcattatgtttgtcctaaatgtaaatatagtgaattctttacagatggatctgtaggt
tcaggagcggatttagaggataaggattgtccaaattgcggaactaaactaataaaagat
ggtcatgatataccttttgaaacttttttaggttttgaaggggataaagaaccggatata
gatttaaatttttcaggagaatatcaaggagtagttcataaatatacagaagttctattt
ggaaagggccatgtttttaaagcaggaactattggtactatagcagaaaaaactgcctat
ggttttgtaaaaaaatatttagatgaaaagaacataaaagctaacaatgcagaaatagaa
agattatctaaaggatgtacaggagttaaaaggacatcaggacagcatccaggaggaatt
atggttgtgcctgcagataatgaaatatttaactttacccctatacaacatccagcagat
gatacagaaagtgatgttataactacccactttgattatcattctataagtggtagactg
ttaaaattagatatattaggtcatgatgatcctacaatacttagaatgcttcaggatttg
accaaggtagatcctaaatctgtacctctaggagatccaaaggttataagtttatttaca
tcaccagaggctttaggggttacagaggaggatatagattgtcctgtaggaacttatggt
cttccagagtttggaactaaattcgtaagacaaatgttattagataccaaacctaaaagt
tttgcagaattggccagaatatcaggattatcccatggtacagatgtatggcttaataac
gctcagtattttataaaagaggggtatactactataaaggattgtatatctacaagagat
gatataatggtatatctacttcaaaaggaactaccaccaaagagcgcttttacaataatg
gaaaaagtaagaaagggtaaaggtcttacggaggaacaggaagctttaatgaaagaacac
gatgtaccagattggtatatagagtcctgtaagaaaataaagtatatgtttcctaaaggt
catgctgtagcctatgtaatgatggctatgagaatagcttattttaaggtttattatcca
agggcttattatgctacttatttctctgttagagcggatgattttgatgcagatctaata
gtaaagggagaagaaaaaataaaagaaaaaatgaatgaattatatgctatgggcaataat
atagctcaaaaggataaaggccttttaactatacttgaaatatgttatgaaatgtataaa
agaggaataaagtttttaaaggtagatttatataaatctaatgctactaaatttttaata
gaaggagataacataagaccacctttaagcgcccttcaaggtgtagggaaaaatgcagct
aaaagtatagaagaagctagattagagggcgaatttatatcaaaagaagatttaagatta
agaactaaagttacaaaaaccgttatagagactttagaaaatcatggttgcttaagagga
atgcaggaaactaaccaaatatccttatttagcctttag
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