Clostridium botulinum F 230613: CBF_2844
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Entry
CBF_2844 CDS
T01865
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBF_2844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbm03019
]
CBF_2844
03009 Ribosome biogenesis [BR:
cbm03009
]
CBF_2844
Enzymes [BR:
cbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBF_2844
Messenger RNA biogenesis [BR:
cbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBF_2844
Ribosome biogenesis [BR:
cbm03009
]
Prokaryotic type
rRNA helicases
CBF_2844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADG00467
LinkDB
All DBs
Position
complement(2989929..2991503)
Genome browser
AA seq
524 aa
AA seq
DB search
MENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGA
PVISALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKD
IKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEK
QTMLFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKDKLEAICRII
DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV
ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI
ERITKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSEVS
AALMEMLFSKEMSFDYTNNKLEAEVPVRLFLSVGRKDSINVKSLLTFIQDSSSVKNHEIG
DIDILDKFTFMDVSSGTAEKIINKCSGKKLNRRKVNIEIAKSKK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaaaactttgaaaatttgaacttaaatgaagatgtactaaaagctatacaa
catatgggatttgaaactccatctgcaatacaagaaaaatcaattccagtagtattagaa
ggagcagatgttatagctcaagctcaaacaggaacaggtaaaaccttagcttttggagct
cctgtaataagcgctttgtgtgacaaggaaaagaaaaaaggcgtaaaagctttagtatta
acacctacaagagaactagcccttcaaataaaagatgagctaaagagattatctaaatat
agtaaaacaaaagtacttcctgtttatggcggagagtctatagaaagacaaataaaagat
attaaaagtggagtagacatagtggttggaactccaggaagagtattagaccacattaat
agaagaactttaaagcttggaggtattgatttcctaattttagatgaagcagatgaaatg
cttaatatgggatttatagaagatatagaaactataatggaaagtacttctgaagaaaaa
caaactatgcttttttcagcgactatgccagcacctattaagaaattagctttaaactac
atgaaaaaagatgtagagcatatagctatagtaaaaaaatctttaacagtagataaaata
gcacaacattattttgcagtgaaaaataaggataaactagaagctatatgtagaataata
gattcagaagaaccagaaagtgctataatattttgtagaacaaaaagaggcgttgatgaa
ttagttgaagctatgcaatcaaagggatacaatgtagaaggtatgcatggagacatgagc
caaaatcaaagaataaatactttgaaaaaatttaaaaaagctactttaaactttttagtt
gcaacagatgtagcggctagaggtatagacgtagaaaatatatctcatgttataaattat
gatatacctcaagatgcggaatcctatgttcatagaataggaagaacaggaagagctgat
aaagaaggaacagcctattctttagttacccctagagaagtatcttctattagacaaata
gaaagaataactaagagcaaaattactaaaaaagaattacctactttagaggatatacta
gaaaagaaatatgataatttattaaatgatataacttctaaaatagaagaaaataaatat
gaaaaatttatgccaatggtaaaaactttagaacaaaattttgatttatctgaagtttca
gcagctttgatggaaatgctatttagtaaagaaatgagctttgattatacaaataacaaa
ctagaggcagaagttccagtaagattatttttaagcgtaggaagaaaagatagtataaat
gtaaaaagtttattaacatttattcaagattcatcctctgtaaaaaatcatgaaattgga
gatatagatatattagataaatttacttttatggatgtatcatcaggcactgcagaaaag
ataataaataaatgttcaggtaaaaaattaaatagaagaaaagttaatatcgaaatagct
aaaagtaaaaagtaa
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