Clostridium botulinum A ATCC 3502: CBO2404
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Entry
CBO2404 CDS
T00533
Name
(GenBank) putative membrane protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cbo
Clostridium botulinum A ATCC 3502
Pathway
cbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBO2404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbo03019
]
CBO2404
Messenger RNA biogenesis [BR:
cbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBO2404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Cas3_HD
PFF1_TM
COP9_hel_rpt
Motif
Other DBs
NCBI-ProteinID:
CAL83950
UniProt:
A5I4H8
LinkDB
All DBs
Position
complement(2530851..2532392)
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AA seq
513 aa
AA seq
DB search
MGPTKYIIIAVVIIIICVILGLYIVDKKAKEKLSEASKEARRLKEEAERDAEAKKKEAIL
EAKEEAHKLRAEVERENRERRNEVQRLERRIIQKEEALDKKSEALENKEEALNKKQQKIE
DVETHMEELHEKQRTELERISGLTTEQAKEFLLEQVRKEVKHETAVMIKEIETKAKEEAD
KRAREVITYAIQRCAADHVAETTVHVVNLPNDEMKGRIIGREGRNIRTLETLTGVDLIID
DTPEAVILSGFDPIRREVARIALEKLIVDGRIHPARIEEMVEKAKKEVEISIKEEGEQAT
FETGIHGLHIELIRLLGRLKYRTSYGQNVLKHSIEVSHLAGLMASELGIDPTLAKRVGLL
HDIGKAVDHEVEGPHAIIGSEIAKKYRESALVVNAIGAHHGDMEPQSLEAILVQAADAIS
AARPGARRETLEAYIKRLEKLEEIANECEGVEKSYAIQAGREIRIMVKPEVLDDTGCIEM
ARNIVKQIESELEYPGQIKVNVIRETRAIEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaacgaaatatataataatcgcagtggttattataataatttgtgtaatttta
ggcttatatatagttgataaaaaagctaaagaaaaattatcagaggcatccaaagaagct
agaagattaaaagaagaggctgaaagagatgcagaggcaaaaaagaaagaagctatatta
gaggctaaagaagaagctcataaattaagagcagaggttgaaagagaaaatagagaaaga
cgtaatgaagttcagcgtcttgaaagaagaataattcaaaaagaagaagctttagataaa
aagagtgaggcccttgaaaacaaagaagaagctttaaacaaaaagcaacaaaaaatagaa
gatgtggaaacacatatggaggagcttcacgaaaagcaaagaacagaattagagagaatt
tcaggacttacaacagaacaggctaaagaatttttattagaacaggttagaaaagaagta
aaacatgaaactgcagtaatgataaaagaaatagaaactaaagctaaggaagaagcagac
aaaagagcaagagaagtcattacatatgccatccaaagatgtgctgcagatcatgtagca
gaaactacagtacatgtagttaatcttcctaacgatgaaatgaaaggaagaataattgga
agagaaggaagaaatataagaacattagaaacgcttacaggggttgatctaataatagat
gatacaccagaagcagttatattatctggtttcgatccaattagaagagaagttgcaaga
attgcattagaaaaattaatagttgatggaagaatccatccagctagaattgaagaaatg
gttgagaaagctaagaaagaagttgaaattagtattaaagaagaaggagaacaggctacc
tttgaaacaggtattcatggtcttcatattgaattgattagattattaggtagattaaag
tacagaacaagttatggtcaaaatgtattaaagcattctatagaagtttcacatttagca
ggtcttatggcctccgaacttggaatagacccaactttagcaaaaagagtaggtttatta
catgatataggtaaggcagtagaccatgaagttgagggaccacacgcaattataggatct
gagatagctaaaaaataccgtgaatccgcattagtagtaaatgctataggagctcatcat
ggtgatatggaaccacaatctctagaagcaatacttgttcaagcggcagatgctatatct
gcagcaagaccaggagctagaagagaaactttagaagcttatataaagagattagaaaag
ttagaagaaattgcaaatgagtgtgaaggtgtagaaaagtcatatgcaattcaagcggga
agagaaataagaattatggttaaaccagaggtgcttgatgatactggctgcattgaaatg
gctaggaatatagttaaacagatagaaagtgaacttgaatatcctggtcaaataaaggtt
aatgtcatcagagaaacccgtgccattgaatatgctaaataa
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